View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_34 (Length: 245)
Name: NF8200_low_34
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26722139 - 26721915
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
100 |
Q |
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| T |
26722139 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
26722040 |
T |
|
| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
26722039 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgtag |
26721940 |
T |
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| Q |
201 |
aacctataaagtgtagatagaaaca |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
26721939 |
aacctataaagtgtagatagaaaca |
26721915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45116783 - 45116994
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45116783 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
45116882 |
T |
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| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcag |
200 |
Q |
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| T |
45116883 |
aaattacacaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcag |
45116969 |
T |
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| Q |
201 |
aacctataaagtgtagatagaaaca |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45116970 |
aacctataaagtgtagatagaaaca |
45116994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2987595 - 2987384
Alignment:
| Q |
1 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtctttgagtagtgagagcattgatgg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2987595 |
tgagtgagaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatgg |
2987496 |
T |
|
| Q |
101 |
aaattacacaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatgatttttcttctttgaaccatatttgcag |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2987495 |
aaattacacaacaaatagagtattaaaccattttctc-------------aaatcataatccaaggctcatggtttttcttctttgaaccatatttgcag |
2987409 |
T |
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| Q |
201 |
aacctataaagtgtagatagaaaca |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
2987408 |
aacctataaagtatagatagaaaca |
2987384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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