View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_37 (Length: 239)
Name: NF8200_low_37
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30260581 - 30260359
Alignment:
| Q |
1 |
tggcatcctggatgaagtgctcttatggtttcgattgcagagcatgcttaaggtgtatggtgtacgtggtcatatgttaagatttgacttcttcaaagtt |
100 |
Q |
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| T |
30260581 |
tggcatcctggatgaagtgctcttatggtttcgattgcagagcatgcttaaggtgtatggtgtacgtggtcatatgttaagatttgacttcttcaaagtt |
30260482 |
T |
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| Q |
101 |
agtagttcactgtaaacgaaaacatgcgaaatccggaaaatcagcacttaaaatattatatgttcatgtatagtaaatgatgaaattattaaaatcatct |
200 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30260481 |
agtagttcactttaaacgaaaacatgagaaatccggaaaatcagcacttaaaatattatatgttcatgtatagtaaatgatgaaattattaaaatcatct |
30260382 |
T |
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| Q |
201 |
tttgttttattgtagtaaaatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
30260381 |
tttgttttattgtagtaaaatat |
30260359 |
T |
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