View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_4 (Length: 502)
Name: NF8200_low_4
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 75 - 486
Target Start/End: Original strand, 2510171 - 2510579
Alignment:
| Q |
75 |
caaatatgatttaagaggagagtgaagattttagtggattagcttaaacttaacgagtttcagttgggatgagtgtctaaaagagctttcttctttgaaa |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510171 |
caaatatgatttaagaggagagtgaagattttagtggattagcttaaacttaacgagtttcagttgggatgagtgtctaaaagagctttcttctttgaaa |
2510270 |
T |
|
| Q |
175 |
gaagttgcagacattgttcaagagaaagtttgataacattgttcaagctgattctgaagggaactctaaacttcctgaaaaacataatcatcatcaggtt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
2510271 |
gaagttgcagacattgttcaagagaaagtttgataacattgttcaagctgattctgaagggaacgctaaacttcctaaaaaacataatca---tcaggtt |
2510367 |
T |
|
| Q |
275 |
aacataaattataaggcagtggttaaagcggaaaacatgaactctgtaaaactcgaaagatgttcaaaggtctcagcaggaaggatagtagtgcgaggtt |
374 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510368 |
aacataaattctaaggcagtggttaaagcggaaaacatgaactctgtaaaactcgaaagatgttcaaaggtctcagcaggaaggatagtagtgcgaggtt |
2510467 |
T |
|
| Q |
375 |
tggcatctatgtcagaatggaaagaaatgaaaagaaagggaaagaaaggtgtactgaatcattctgggagaattgaggtaagaataagctataatcactt |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510468 |
tggcatctatgtcagaatggaaagaaatgaaaagaaagggaaagaaaggtgtactgaatcattctgggagaattgaggtaagaataagctataatcactt |
2510567 |
T |
|
| Q |
475 |
ttctagcttttg |
486 |
Q |
| |
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|||||||||||| |
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| T |
2510568 |
ttctagcttttg |
2510579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 193 - 422
Target Start/End: Original strand, 2512020 - 2512255
Alignment:
| Q |
193 |
caagagaaagtttgataacattgttcaagctgattctgaagggaactctaaacttcctgaaaaacataatca------tcatcaggttaacataaattat |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
2512020 |
caagagaaagtttgataacattgttcaagctgattctgcagggaaccctaaacttcctgaaaaacataatcatcatcatcatcaggttaacataaattct |
2512119 |
T |
|
| Q |
287 |
aaggcagtggttaaagcggaaaacatgaactctgtaaaactcgaaagatgttcaaaggtctcagcaggaaggatagtagtgcgaggtttggcatctatgt |
386 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2512120 |
aaggcagtggttaaagtggaaaacatgaacactgtaaaactcaaaagtaattcaaaggtctcatcaggaaggatagtagtgcgaggtttggcatctatgt |
2512219 |
T |
|
| Q |
387 |
cagaatggaaagaaatgaaaagaaagggaaagaaag |
422 |
Q |
| |
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| T |
2512220 |
cagaatggaaagaaataaaaagaaagggaaagaaag |
2512255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 193 - 422
Target Start/End: Original strand, 2495857 - 2496086
Alignment:
| Q |
193 |
caagagaaagtttgataacattgttcaagctgattctgaagggaactctaaacttcctgaaaaacataatcatcatcaggttaacataaattataaggca |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| || |||||||||||||| ||||| | |
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| T |
2495857 |
caagagaaagtttgataacattgttcaagctgattctgaagggaacactagccttcctgaaaaatataatcatcttctggttaacataaattctaaggta |
2495956 |
T |
|
| Q |
293 |
gtggttaaagcggaaaacatgaactctgtaaaactcgaaagatgttcaaaggtctcagcaggaaggatagtagtgcgaggtttggcatctatgtcagaat |
392 |
Q |
| |
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||||||||||| |||||||| ||| |||||||||||||||| |||| | ||||||| |||| |||| | |||||| |||||| ||| ||||||| |
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| T |
2495957 |
gtggttaaagcagaaaacatcaacactgtaaaactcgaaagtagttccatggtctcatcaggcaggaaattagtgcacggtttgatggctacatcagaat |
2496056 |
T |
|
| Q |
393 |
ggaaagaaatgaaaagaaagggaaagaaag |
422 |
Q |
| |
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|||||| || | |||| ||||||||||||| |
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| T |
2496057 |
ggaaagcaagggaaagtaagggaaagaaag |
2496086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 2511948 - 2511994
Alignment:
| Q |
141 |
ggatgagtgtctaaaagagctttcttctttgaaagaagttgcagaca |
187 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2511948 |
ggatgagtgtctaaaggagctttcttctttgaaagaagttgcagaca |
2511994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 2495785 - 2495825
Alignment:
| Q |
141 |
ggatgagtgtctaaaagagctttcttctttgaaagaagttg |
181 |
Q |
| |
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| T |
2495785 |
ggatgagtgtctgaaggagctttcttctttgaaagaagttg |
2495825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 4258303 - 4258346
Alignment:
| Q |
141 |
ggatgagtgtctaaaagagctttcttctttgaaagaagttgcag |
184 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
4258303 |
ggatgagtgtctaaaggagctcgcttctttgaaagaagttgcag |
4258346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 486
Target Start/End: Complemental strand, 34545350 - 34545321
Alignment:
| Q |
457 |
aataagctataatcacttttctagcttttg |
486 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
34545350 |
aataagctataatcacttttctagcttttg |
34545321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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