View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_6 (Length: 492)
Name: NF8200_low_6
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Original strand, 13574877 - 13575276
Alignment:
| Q |
20 |
gatcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggatctgttacttgtgattatcctcctaaacctgaaagtactcttccat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13574877 |
gatcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggacctgttagttgtgattatcctcctaaacctgaaagtactcttccat |
13574976 |
T |
|
| Q |
120 |
gatcattgttagtgaacatggctggtgtgtgttaatgatatatttgttatatctataataatgttgtgtgaatgtgtgagtattataatatcaaaactat |
219 |
Q |
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| T |
13574977 |
gatcattgttagtgaacatggctggtgtgtctt--------------tatatctataataatgttgtgtgaatgtgtgagtattataatatcaaaactat |
13575062 |
T |
|
| Q |
220 |
agagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatatgtagttttacttttatgctatactacataaactatt |
319 |
Q |
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| T |
13575063 |
agagctaaattaactttatgagaggcttgtttggactttgggtatgtacatctgctccagatatgtagttttacttttatgcta---tacataaactatt |
13575159 |
T |
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| Q |
320 |
tgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttcatgtgtagggataatctgaatatatattgtgtctta |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13575160 |
tgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtttactttcatgtgtagggataatctgaatatatattgtgtctta |
13575257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 84 - 439
Target Start/End: Original strand, 13564109 - 13564448
Alignment:
| Q |
84 |
gtgattatcctcctaaacctgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgttatatctataataatgt |
183 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
13564109 |
gtgattctcctcctcaacctgaaagtactcttccatgatcattcttagtgaacatggctggtgtgtcttaatgatatat---ctatatctataataatgt |
13564205 |
T |
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| Q |
184 |
tgtgtgaatgtgtgagtattataatatcaaaactatagagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatat |
283 |
Q |
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||||||| |||||||| ||||||||||||| | ||| |||||||| | ||||||| ||||||||| || ||||||| ||| |||||||||| |||| |
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| T |
13564206 |
tgtgtgagtgtgtgagcattataatatcaatattatgtagctaaataacctttatgggaggcttgtgtgaactttgg----gtatgtctgctccaaatat |
13564301 |
T |
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| Q |
284 |
gtagttttacttttatgctatactacataaactatttgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttc |
383 |
Q |
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| T |
13564302 |
gtagttttactttta---tatact--ataaactatttgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtgtacttta |
13564394 |
T |
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| Q |
384 |
atgtgtagggataatctgaatatatattgtgtcttatctttgttttagtttatata |
439 |
Q |
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| T |
13564395 |
ttttgtagggataatctgaatatatat--tgtcttatctttattttagtttatata |
13564448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 438
Target Start/End: Original strand, 13571315 - 13571725
Alignment:
| Q |
21 |
atcctcattctgtctactgtcactggtacaacaaaaggttttgctctaccggatctgttacttgtgattatcctcctaaacctgaaagtactcttccatg |
120 |
Q |
| |
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||||| |||||||||| ||||| |||||||||||||||||||||| ||| | || |||||||||||| | |||||||||||||||||||||||||||| |
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| T |
13571315 |
atcctaattctgtctattgtcaatggtacaacaaaaggttttgcttagccgcacctattacttgtgattcttctcctaaacctgaaagtactcttccatg |
13571414 |
T |
|
| Q |
121 |
atcattgttagtgaacatggctggtgtgtgttaatgatatatttgt---------tatatctataataatgttgtgtgaatgtgtgagtattataatatc |
211 |
Q |
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|||||||||| |||||||||||||||||| ||||| |||||| | | |||||||||||||||||||||||| || || ||||||||| |
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| T |
13571415 |
atcattgttactgaacatggctggtgtgtcttaataatatatctatctatctatctatatctataataatgttgtgtga------gactactataatatc |
13571508 |
T |
|
| Q |
212 |
aaaactatagagctaaattaactttatgagaggcttgtttggactttgggtacgtacgtctgctccagatatgtagttttacttttatgctatactacat |
311 |
Q |
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|| | |||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||| || | |
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| T |
13571509 |
aatattatatagctaaataacctttatgagaggcttgtttggactttgg----gtacgtctgctccagatatatacttttactttta---tatgct--tt |
13571599 |
T |
|
| Q |
312 |
aaactatttgtattacagtgtgatatgttataaattactatatgaaatattggaataaattggtttactttcatgtgtagggataatctgaatat-atat |
410 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
13571600 |
aaactatttgtattacagtgt--catgttataaattactatatgaaatattggaataaattggtgtactttcttgtgtagggataatctgaatatcatat |
13571697 |
T |
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| Q |
411 |
tgtgtcttatctttgttttagtttatat |
438 |
Q |
| |
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||| | ||||||| ||||||||||||| |
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| T |
13571698 |
tgtcttatatctttattttagtttatat |
13571725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 14203446 - 14203553
Alignment:
| Q |
84 |
gtgattatcctcctaaacctgaaagtactcttccatgatcattgttagtgaacatggctggtgtgtgttaatgatatatttgt-tatatctataataatg |
182 |
Q |
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|||||| |||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||| |||||| | | | ||| |||||||||| |
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| T |
14203446 |
gtgattctcctcctatgcctgaaaacactcttccatgattattgttactgaacatggctggtgtgtcttaataatatatctatatctatatataataatg |
14203545 |
T |
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| Q |
183 |
ttgtgtga |
190 |
Q |
| |
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|||||||| |
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| T |
14203546 |
ttgtgtga |
14203553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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