View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8200_low_7 (Length: 484)
Name: NF8200_low_7
Description: NF8200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8200_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 465
Target Start/End: Complemental strand, 1452855 - 1452403
Alignment:
| Q |
14 |
ataatactcaagcaattatacttcaacaatctcttttattctaaattattagtaattaattcttccaattgtacnnnnnnnnnnnnnnnnnnnn-gcaag |
112 |
Q |
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| T |
1452855 |
ataatactcaagcaattatacttcatcaatctcttttattctaaattattagtaattaattcttccaattgtacaaaaccaaaaaaaatcaaaaagcaag |
1452756 |
T |
|
| Q |
113 |
gacagaatagacataaagtttataacgtactttgttttctatattttgttgcaagtcaaatttactttttggtagnnnnnnngttggcctgtaccatttg |
212 |
Q |
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| T |
1452755 |
gacagaatagacataaagtttataatgtactttgttttctatattttgttgcaagtcaaatttactttttggtagtttttttgttggcctgtaccatttg |
1452656 |
T |
|
| Q |
213 |
gtttaacaatttcctgcaaccagcagcaccgaggtatcaaagcaaatggaaccattcttaaatttagttcttaaattatcattctttcatcaatttactc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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| T |
1452655 |
gtttaacaatttcctgcaaccagcagcaccgaggtatcaaagcaaatggaaccattcttaaatttagttcttaaattatcgttcttaaattaatttactc |
1452556 |
T |
|
| Q |
313 |
tcgaaccatataaatataataactaatacttaaagtacagaaattcatcaatttagtccataaagtattagaaaatacatcgatcaatttagtccataat |
412 |
Q |
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| T |
1452555 |
tcgaaccatataaatataataactaatacttaaagtacagaaattcatcaatttagtccataaagtattagaaaatacatcgatcaatttagtccataat |
1452456 |
T |
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| Q |
413 |
atattaataacaatggttcccctcttaaaaatgatcgtttggaacgtaactgt |
465 |
Q |
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| T |
1452455 |
atattaataacaatggttcccctcttaaaaatgatcgtttggaacgtaactgt |
1452403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 202 - 439
Target Start/End: Complemental strand, 1453990 - 1453751
Alignment:
| Q |
202 |
tgtaccatttggtttaacaatttcctgcaaccagca-gcaccgaggtatcaaagcaaatggaaccattcttaaatttagttcttaaa-ttatcattcttt |
299 |
Q |
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|||||||||||||||| ||| ||||||||||||| | | || || | |||||||| || |||| |||||||| |||| ||||||||| ||||||||||| |
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| T |
1453990 |
tgtaccatttggtttaccaaattcctgcaaccagtaagaactgatgcatcaaagctaaaggaagcattcttagattttgttcttaaaattatcattctta |
1453891 |
T |
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| Q |
300 |
catcaatttactctcgaaccatataaatataataactaatacttaaagta-cagaaattcatcaatttagtccataaagtattagaaaatacatcgatca |
398 |
Q |
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| T |
1453890 |
aaccaatttagtctctaaccatataaataaaataaccgatacctaaagtaggtgatatttgtcaatttagtccataaagtattagaaaatcgat-tatca |
1453792 |
T |
|
| Q |
399 |
atttagtccataatatattaataacaatggttcccctctta |
439 |
Q |
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|||| ||||||||||| |||||||||||| | ||||||||| |
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| T |
1453791 |
atttggtccataatatcttaataacaatgatccccctctta |
1453751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 1454028 - 1453996
Alignment:
| Q |
153 |
atattttgttgcaagtcaaatttactttttggt |
185 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
1454028 |
atattttggtgcaagtcaaatttactttttggt |
1453996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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