View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8201_high_2 (Length: 393)
Name: NF8201_high_2
Description: NF8201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8201_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 36133150 - 36132798
Alignment:
| Q |
18 |
cagtggataccaaaccattgctgtagaatacctaaatgtgtgtcaccattgaactcgtttccacatagcacatctcctattaaagcaaagtcactggttc |
117 |
Q |
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| T |
36133150 |
cagtggataccaaaccattgctgtagaatacctaaatgtgtgtcaccattgaactcatttccacatagcacatctcctattaaagcaaagtcactggttc |
36133051 |
T |
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| Q |
118 |
agtccaaatattatattaaaaatataaatacagaatagacctttaactaatccaatatatgttttaccaaactttaaaaatgtcatattgtacttaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36133050 |
agtccaaatattatattaaaaatataaatacagaatagacctttaactaatccaatatatgttttaccaaactttaaaaatgtcatattgtacttaaaat |
36132951 |
T |
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| Q |
218 |
aagtctataataacaggtccaataatggatttgtaccaattannnnnnnngaac-agaatagattggcccagcctatcctgacaactaatgccaagaatc |
316 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36132950 |
aagtctataataacaggtacaataatggacttgtaccaattattttttttgaacaagaatagattggcccagcctatcctgacaactaatgccaagaatc |
36132851 |
T |
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| Q |
317 |
catttgtcatattttacatttatctataataatcacatgtttgtctataacatcaacaagc |
377 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36132850 |
catttgtcatattttacatt--------ataatcacatgtttgtctataacatcaacaagc |
36132798 |
T |
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