View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8202_high_15 (Length: 231)
Name: NF8202_high_15
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 23040984 - 23041196
Alignment:
| Q |
1 |
tattgtttatatctctaatttcctttgttattttaattctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23040984 |
tattgtttatatctctaatttcctttgttattttaattctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagca |
23041083 |
T |
|
| Q |
101 |
tgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaatagcttttgcgtagt |
200 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23041084 |
tgaactaccgcggcataagttgtatccattgattagtgctgctgatgccaaatttgatcatgtgtcaacggtagaagcgtaagaatagcttttgcgtagt |
23041183 |
T |
|
| Q |
201 |
tgtctatcggctt |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23041184 |
tgtctatcggctt |
23041196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 42743490 - 42743299
Alignment:
| Q |
1 |
tattgtttatatctctaatttcctttgttattttaattcttta-----gtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttca |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
42743490 |
tattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttca |
42743391 |
T |
|
| Q |
96 |
gagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaata |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
42743390 |
gagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaata |
42743299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 42752849 - 42752658
Alignment:
| Q |
1 |
tattgtttatatctctaatttcctttgttattttaattcttta-----gtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttca |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
42752849 |
tattgtttatatctctaatttcctttgttattttaattctttaatttagtaagtttaattaattgtttgaaattgtcattgttagggagagagcctttca |
42752750 |
T |
|
| Q |
96 |
gagcatgaattaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaata |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
42752749 |
gagcatgaattaccgcctcataagttgtacccattgattagtgctgctgatgccaaatttgatcatgtgtcagcgggagaagcgtaagaata |
42752658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 42762308 - 42762119
Alignment:
| Q |
6 |
tttatatctctaatttcctttgttattttaat-tctttagtaagtttaattaattgtttgaaactgtcattgttagggaaagagcctttcagagcatgaa |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||| | | ||||||||||| ||||||||||||| |||| |
|
|
| T |
42762308 |
tttatatctctaacttcctttgttattttaatatttttagtaaggttaattacttgtttgaaatttttattgttagggagctagcctttcagagcttgaa |
42762209 |
T |
|
| Q |
105 |
ttaccgcctcataagttgtacccgttgattagtgctgctggtgccaaacttgatcatgtgtcagcggtagaagcgtaagaatagcttttgc |
195 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| || |||| ||||||||||||| || | || |||||||||| |||||||| |
|
|
| T |
42762208 |
ttaccacctcataagttgtacccattgataagtgctgctgatgtcaaatttgatcatgtgtctgcagaggatgcgtaagaat-gcttttgc |
42762119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University