View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_high_17 (Length: 229)
Name: NF8202_high_17
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52594543 - 52594320
Alignment:
| Q |
1 |
agaggcttggtgaggatatcagctctttgattacaatcgtgaatgtgagtgagaaacatgcaacaccttgttgagaaccttctctctaacnnnnnnnnnn |
100 |
Q |
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| T |
52594543 |
agaggcttggtgaggatatcagctctttgattacaatcgtgaatgtgagtgagaaacatgcaacaccttgctgagaaccttctctctaacaaaaaaa--- |
52594447 |
T |
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| Q |
101 |
ngaaggtaaatttacgtatgttttgttctagcatgatgaaatcggatgcaggtcatgggaatagtactctcattgtcacaatagacgatataagaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||| |
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| T |
52594446 |
--aaggtaaatttacgtatgttttgttctagcatgatgaaatgggatgcaggtcatggcaatagtactttcgttgtcacaatagacgatagaagaagaaa |
52594349 |
T |
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| Q |
201 |
atatcactcttagttctttgagaaggatc |
229 |
Q |
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| T |
52594348 |
atatcactcttagttctttgagaaggatc |
52594320 |
T |
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