View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_10 (Length: 416)
Name: NF8202_low_10
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 48478896 - 48478500
Alignment:
| Q |
1 |
caggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtgaaaccaggtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478896 |
caggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtgaaaccaggtga |
48478797 |
T |
|
| Q |
101 |
aggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478796 |
aggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatgga |
48478697 |
T |
|
| Q |
201 |
gtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaatcttcatgggttaattttgatgatgtggaagctattaaagaaaaagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478696 |
gtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaatctacatgggttaattttgatgatgtggaagctattaaagaaaaagttt |
48478597 |
T |
|
| Q |
301 |
cttatgcaaagaaaaatggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttcaacggcaggtgaatttgttgtacc |
397 |
Q |
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| T |
48478596 |
cttatgcaaagaaaaatggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttcaacggcaggtgaatttgttgtacc |
48478500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 397
Target Start/End: Complemental strand, 48470526 - 48470138
Alignment:
| Q |
9 |
aaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtgaaaccaggtgaaggtggtg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48470526 |
aaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatatgcatggacacttgtgaaaccaggtgaaggtggtg |
48470427 |
T |
|
| Q |
109 |
ttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatggagtagtttc |
208 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48470426 |
ttggtagaccaacttctggtcctgcttttacaatggatggttcaatgtcttataagtttataaaaagttacattagaggctttggtgatggagtagtttc |
48470327 |
T |
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| Q |
209 |
acgttataatgacacttttgtggtgaattatttcactgttgaatcttcatgggttaattttgatgatgtggaagctattaaagaaaaagtttcttatgca |
308 |
Q |
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| T |
48470326 |
acgttataatgacacttttgtggtgaattatttcactgttgcatctacttgggttaattttgatgatgtggaagctattaaagaaaaagtttcttatgca |
48470227 |
T |
|
| Q |
309 |
aagaaaaatggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttcaacggcaggtgaatttgttgtacc |
397 |
Q |
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| T |
48470226 |
aagaaaaatggattacttggttacagtgtgttccaagttgggaatgatgacaattgggtcctttcaacggcaggtaaatttcttgtacc |
48470138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 48487365 - 48486980
Alignment:
| Q |
1 |
caggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtgaaaccaggtga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48487365 |
caggtattaaagagtggagaaaaagaggattttcttctcacaaacttgtaattggtttgccttatcatggatttgcttggacacttgtgaaaccaggtga |
48487266 |
T |
|
| Q |
101 |
aggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatgga |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||| |||||||||| ||| |
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| T |
48487265 |
aggtggtgttggtaaaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagttatattagaagctttggtgacgga |
48487166 |
T |
|
| Q |
201 |
gtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaat---cttcatgggttaattttgatgatgtggaagctattaaagaaaaag |
297 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||| ||||||| || || | ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
48487165 |
gtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttgatgatgtgaaagctattaaagtaaaag |
48487066 |
T |
|
| Q |
298 |
tttcttatgcaaagaaaaatggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttcaacggcaggt |
383 |
Q |
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| T |
48487065 |
tatcttatgcaaagaaaaatggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctttcaaaggcaggt |
48486980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 48883387 - 48883716
Alignment:
| Q |
1 |
caggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatttgcatggacacttgtgaaaccaggtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48883387 |
caggtatcaaagagtggagaaaaagaggattttcttctaacaaacttgtaattggtttgccttatcatggatatgcatggacacttgtgaaaccaggtga |
48883486 |
T |
|
| Q |
101 |
aggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatgga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| || |||| || ||||||| |
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| T |
48883487 |
aggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaattacattagcggctctgatgatgga |
48883586 |
T |
|
| Q |
201 |
gtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaatcttcatgggttaattttgatgatgtggaagctattaaagaaaaagttt |
300 |
Q |
| |
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||||||||| ||||||||| || ||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||| |||||||||||| |||| |
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| T |
48883587 |
gtagtttcatattataatgagacatttgtggtgaattatttcactgttgcatctacttggg-taattttgatgatgtggaagttattaaagaaaaggttt |
48883685 |
T |
|
| Q |
301 |
cttatgcaaagaaaaatggattacttggttac |
332 |
Q |
| |
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||||||||||||||||||| |||||||||||| |
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| T |
48883686 |
cttatgcaaagaaaaatgg-ttacttggttac |
48883716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 122 - 397
Target Start/End: Original strand, 38816834 - 38817115
Alignment:
| Q |
122 |
ttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagttacatcagaggctttggtgatggagtagtttcacgttataatgac |
221 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| ||||||||||||||||||| ||||||||||| |
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| T |
38816834 |
ttctggtcctgcttttacaatggatggttcagtggcttataagtatatgaaaagttacattagaagctctggtgatggagtagtttcatgttataatgac |
38816933 |
T |
|
| Q |
222 |
acttttgtggtgaattatttcactgttgaatc------ttcatgggttaattttgatgatgtggaagctattaaagaaaaagtttcttatgcaaagaaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816934 |
gcttttgtggtgaattatttcactgttgcatccactagtacatgggttaattttgatgatgtggaagctattaaagaaaaagtttcttatgcaaagaaaa |
38817033 |
T |
|
| Q |
316 |
atggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttcaacggcaggtgaatttgttgtacc |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38817034 |
atggattacttggttacagtgtgttccaagttgggaatgatgacaattgggtcctttcaacggcaggtaaatttgttgtacc |
38817115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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