View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_11 (Length: 410)
Name: NF8202_low_11
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 55 - 394
Target Start/End: Complemental strand, 10249557 - 10249219
Alignment:
| Q |
55 |
aataagtcaattaaaacacgtttttaacgagacaagtttaattcaccatctagtgattctagtccaaacatctttcaaaaatgaaaatattaaatggcta |
154 |
Q |
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| T |
10249557 |
aataagtcaattaaaacatgtttttaacgagacaaatttaattcaccatctagtgattctagtccaaacatctttcaaaaatgaaaatattaaatggcta |
10249458 |
T |
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| Q |
155 |
agnnnnnnncccctttcacccggtggtctagcaacttattttttctttcaaaccaattttagcttaaacgtatatggataacggttggtttgattcacaa |
254 |
Q |
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| T |
10249457 |
aatttttttcccctttcacccggtggtctagcaacttattttttctttcaaaccaattttagcttaatcgtataaggatgacggttggtttgattcacaa |
10249358 |
T |
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| Q |
255 |
tttgaagtttttacctagatgtaagtgtaactttacaaagttctaatcctacctggtggtgagaggaaataagtttcaaaaacttgcacttactaacttg |
354 |
Q |
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| T |
10249357 |
tttgaagtttttacctaggtgtaagtgtaactttacaaaattttaatcctacctgttgatgagaggaaataagtttcaaaaacttgcacttaataacttg |
10249258 |
T |
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| Q |
355 |
aaacaacttcacaaaatataaatataaattacttcaaact |
394 |
Q |
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| T |
10249257 |
aaacaacttgac-aaatataaatataaattacttcaaact |
10249219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 10249616 - 10249579
Alignment:
| Q |
15 |
tataatcttattataataaattattttaaaacaatctc |
52 |
Q |
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| T |
10249616 |
tataatcttattataataaattattttaaaacaatctc |
10249579 |
T |
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