View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_12 (Length: 354)
Name: NF8202_low_12
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 28734198 - 28733876
Alignment:
| Q |
18 |
tataaaaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgttggagatagtttgtgctgaagatgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||| |
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| T |
28734198 |
tataaaaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaataatgctgtagatagtttgagctgaagatgat |
28734099 |
T |
|
| Q |
118 |
tgactcacctgataaaacaatgataataacataagagaccagtaaaatcaatgaaacgaaagaaacaatagaaataatcacttcacattttaattgnnnn |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734098 |
tgactcacctgataaaataatgataataacataagagaccagtaaaatcaatgaaacgaaagaaacaatagaaataatcacttcacattttaattg---- |
28734003 |
T |
|
| Q |
218 |
nnnnnnnnnnntacaagattggggacgactaagacttacatttgttttgatcaatccttgttcctatcaaagtagaagaaaatcaaaatggaagataatc |
317 |
Q |
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||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28734002 |
aaaaaaaaaaatacaagattggtgacgactaagatttacatttgttttgattaatccttgttcctatcaaagtagaagaaaatcaaaatggaagataatc |
28733903 |
T |
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| Q |
318 |
tatactaagaaatgtcacttcatctca |
344 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
28733902 |
tatactgagaaatgtcacttcatctca |
28733876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 344
Target Start/End: Complemental strand, 28727979 - 28727665
Alignment:
| Q |
23 |
aaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgttggagatagtttgtgctgaagatgattgact |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
28727979 |
aaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgttggagatagtttgagttgaagatgattgact |
28727880 |
T |
|
| Q |
123 |
cacctgataaaacaatgataataacataagagaccagtaaaatcaatgaaacgaaagaaacaatagaaataatcacttcacattttaattgnnnnnnnnn |
222 |
Q |
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|||||||||||| ||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
28727879 |
cacctgataaaataatgataataatataagagaccaataaaattaatgcaacgaaagaaacaatagaaataatcacttcacattttaatcg------aaa |
28727786 |
T |
|
| Q |
223 |
nnnnnntacaagattggggacgactaagacttacatttgttttgatcaatccttgttcctatcaaagtagaagaaaatcaaaatggaagataatctatac |
322 |
Q |
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||||||||||| ||| || |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||||||||||| |
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| T |
28727785 |
aaaaaatacaagattggcgacaacaaagacttacatttgttttgatcaatccttgtttctctc-aagtagaagaaaatgaaaattgaagataatctatac |
28727687 |
T |
|
| Q |
323 |
taagaaatgtcacttcatctca |
344 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
28727686 |
tgagaaatgtcacttcatctca |
28727665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 28725492 - 28725382
Alignment:
| Q |
23 |
aaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgttggagatagtt--tgtgctgaagatgattga |
120 |
Q |
| |
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||||||||||||||||| ||| ||||||||||| ||||| ||||| |||||||||||||||| ||||||| |||||||| || | ||||||| ||||| |
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| T |
28725492 |
aaagtaagccatcttcaccagaaaataagattac-ttgttgaacaaacatcgtctccattcaatgatgttgtagatagttaatgagttgaagataattga |
28725394 |
T |
|
| Q |
121 |
ctcacctgataa |
132 |
Q |
| |
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| |||||||||| |
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| T |
28725393 |
cccacctgataa |
28725382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 32281176 - 32281067
Alignment:
| Q |
23 |
aaagtaagccatcttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaaagatgttggagatagtttgtgctgaagatgattgact |
122 |
Q |
| |
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|||| |||||||||||| ||| ||||| ||||||||| || || || || |||||||||||| ||||| |||||||||| | ||||||||||| ||| |
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| T |
32281176 |
aaagaaagccatcttcaccagaaaatatgattaaattcttggacgataattgtctccattcaataatgttctagatagtttgagttgaagatgattcact |
32281077 |
T |
|
| Q |
123 |
cacctgataa |
132 |
Q |
| |
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|| ||||||| |
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| T |
32281076 |
catctgataa |
32281067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 32280985 - 32280896
Alignment:
| Q |
248 |
aagacttacatttgttttgatcaatccttgttcctatcaaagtagaagaaaatcaaaatggaagataatctatactaagaaatgtcacttc |
338 |
Q |
| |
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||||||| ||||| ||||||| ||||||||||||| || | ||||||| |||| |||||| ||||||||||||| | ||||||| ||||| |
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| T |
32280985 |
aagacttgcatttattttgattaatccttgttcctctc-atgtagaagcaaatgaaaatgaaagataatctatattgtgaaatgttacttc |
32280896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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