View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_14 (Length: 304)
Name: NF8202_low_14
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 50465461 - 50465730
Alignment:
| Q |
17 |
aaaaaccgtctcacgcaatatgaaatatacacttagaataaaggaaagaaagtgatataagaagnnnnnnnntaatagatttgatgtagcaaaacagaga |
116 |
Q |
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| T |
50465461 |
aaaaaccgtctcacgcaatatgagatataca------ataaaggaaagaaagtgatataagaagaaaaaa--taatagatttgatgtagcaaaatagaga |
50465552 |
T |
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| Q |
117 |
ggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaaaaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50465553 |
ggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgtatagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaaaaaga |
50465652 |
T |
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| Q |
217 |
at-------tagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgattgatgt |
287 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50465653 |
attagtaagtagtaatacacagttgcatatccattcttttatgtacatgcataatgcattacattctgtgatcgatgt |
50465730 |
T |
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