View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_15 (Length: 304)
Name: NF8202_low_15
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 23768685 - 23768976
Alignment:
| Q |
1 |
ctccataggtgaccagagaattcttcggatgagctaaacaacttcataattggaacttgaattgggtttccctttgagtcaatgcatggtgatgaagtgt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23768685 |
ctccataggtgaccagagaattcttctgatgagctaaacaacttcataattggaacttgaattgggtttccctttgagtcaatgcatggtgatgaagtgt |
23768784 |
T |
|
| Q |
101 |
aatgttcatagagaagccttgtaaggtcttggaagactaaagggttaaccacagatgaagcaatttggtacacatttatatctcgtttttgtgttgttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23768785 |
aatgttcatagagaagccttgtaaggtcttggaagactaaagggttaaccacagatgaagcaatttggtacacatttatatctcgtttttgtgttgttcc |
23768884 |
T |
|
| Q |
201 |
atgttttgccattgctgctaaggttgcattaacaaccatgtcagctggtacctatatattcagagcaagtcaagtcatcttagtgtgagaat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23768885 |
atgttttgccattgctgctaaggttgcattaacaaccatgtcagctggtacctatagattcagagcaagtcaagtcatcttagtgtgagaat |
23768976 |
T |
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