View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_22 (Length: 229)
Name: NF8202_low_22
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 7134760 - 7134872
Alignment:
| Q |
102 |
tgaagcagccaccaacaaatacttcctcaaacacaatacactagttgccttgaagttatctcaaacaaatttccttaaatactgaaatttataaatcccc |
201 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7134760 |
tgaagcagccaccaacaaaaacttcctcaaacacaatacactagttgccttgaagttatctcaaacaaatttccttaaatactgaaatttataaatcccc |
7134859 |
T |
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| Q |
202 |
cttaaagtataat |
214 |
Q |
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||||||||||||| |
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| T |
7134860 |
cttaaagtataat |
7134872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 7137683 - 7137795
Alignment:
| Q |
102 |
tgaagcagccaccaacaaatacttcctcaaacacaatacactagttgccttgaagttatctcaaacaaatttccttaaatactgaaatttataaatcccc |
201 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7137683 |
tgaagcagccaccaacaaaaacttcctcaaacacaatacactagttgccttgaagttatctcaaacaaatttccttaaatactgaaatttataaatcccc |
7137782 |
T |
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| Q |
202 |
cttaaagtataat |
214 |
Q |
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||||||||||||| |
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| T |
7137783 |
cttaaagtataat |
7137795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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