View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_3 (Length: 636)
Name: NF8202_low_3
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 617
Target Start/End: Original strand, 3338164 - 3338763
Alignment:
| Q |
14 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
113 |
Q |
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| T |
3338164 |
cagagatcacaaaaagacagtggaaagcaccgaagagttagctgaattactctgaaatctctgaaacctacctaaaattaattagtgataataatatgat |
3338263 |
T |
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| Q |
114 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggc----ct |
209 |
Q |
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| T |
3338264 |
attaatcacaagtcattgatatatattgagaataacaactcccgtgcgtgcgcaaatactaaaacccatgcatccaaagatgccctttgtcggcctctct |
3338363 |
T |
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| Q |
210 |
ctctctcttatgctccatccaatgcactcatggtggatcccacaa-ccctcctcctcttcatttcattatatgtgtgtgagtttgtcagattcttagacg |
308 |
Q |
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| T |
3338364 |
ctctctcttatgctccatccaatgcactcatggtggaccccacaacccctcctcctcttcatttcattatctgtgtgtgagtttgtcagattcttagacg |
3338463 |
T |
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| Q |
309 |
cgtgcttacttcaaatccaagtcttatcctcaaagcatttctcaattagggtgacaaatgacaattatcatgtgaacttattctacctaatctacctttc |
408 |
Q |
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| T |
3338464 |
cgtgcttacttcaaatccaagtcttatcctcaaatcatttctcaattagggtgacaaatgacaattatcatgtgaacttat---------tctacctttc |
3338554 |
T |
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| Q |
409 |
accacctttagttaacttgaatatatacctcccttctcaaatcactaattttcatatgagaatctctcggacatataagatgcatgaattctcctctttt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
3338555 |
accacctttagttaacttgaatatatacctcccttctcaaatgactaattttcataggagaatctctcggacacataagatgcatagattctcctctttt |
3338654 |
T |
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| Q |
509 |
aatcgaannnnnnncacacgtatgaatcaggaatcgaacatctgaccacatgtttaaaagatccaaatctcttactattttaatcaataaagtattggtt |
608 |
Q |
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| T |
3338655 |
aatcgaattttttccacacgtatgaatcaggaatcgaacatctgaccacatgtttaaaagatccaaatctcttaccatttaaatcaataaagtattggtt |
3338754 |
T |
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