View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8202_low_30 (Length: 203)
Name: NF8202_low_30
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 19043451 - 19043280
Alignment:
| Q |
19 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
118 |
Q |
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| T |
19043451 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
19043352 |
T |
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| Q |
119 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctac |
190 |
Q |
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| T |
19043351 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctac |
19043280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 20711185 - 20711356
Alignment:
| Q |
19 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20711185 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
20711284 |
T |
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| Q |
119 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctac |
190 |
Q |
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| T |
20711285 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctac |
20711356 |
T |
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