View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8202_low_4 (Length: 617)

Name: NF8202_low_4
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8202_low_4
NF8202_low_4
[»] chr6 (20 HSPs)
chr6 (1-606)||(7137772-7138380)
chr6 (1-524)||(7134849-7135375)
chr6 (285-526)||(7132213-7132454)
chr6 (107-195)||(7116774-7116864)
chr6 (107-195)||(7121846-7121936)
chr6 (107-195)||(7129151-7129241)
chr6 (306-446)||(6423834-6423974)
chr6 (109-220)||(7174099-7174204)
chr6 (306-502)||(19633026-19633228)
chr6 (373-481)||(8913372-8913480)
chr6 (395-474)||(6417110-6417189)
chr6 (396-445)||(28935357-28935406)
chr6 (395-447)||(6410713-6410765)
chr6 (387-446)||(14809709-14809768)
chr6 (395-443)||(10579088-10579136)
chr6 (377-444)||(6403578-6403645)
chr6 (396-431)||(9412143-9412178)
chr6 (395-443)||(6395555-6395603)
chr6 (109-184)||(7114214-7114290)
chr6 (109-184)||(7122689-7122765)
[»] chr3 (3 HSPs)
chr3 (387-479)||(51763344-51763436)
chr3 (399-474)||(13469608-13469683)
chr3 (396-436)||(1657546-1657586)
[»] chr1 (2 HSPs)
chr1 (395-502)||(19467362-19467469)
chr1 (396-457)||(7555217-7555278)
[»] chr7 (1 HSPs)
chr7 (395-511)||(10615731-10615847)
[»] chr4 (4 HSPs)
chr4 (395-435)||(553777-553817)
chr4 (395-479)||(1755571-1755655)
chr4 (377-426)||(571330-571379)
chr4 (403-435)||(53760291-53760323)
[»] chr8 (5 HSPs)
chr8 (374-479)||(5766559-5766664)
chr8 (374-478)||(14004140-14004244)
chr8 (395-479)||(17642889-17642973)
chr8 (395-457)||(17635632-17635694)
chr8 (396-436)||(28246055-28246095)
[»] chr5 (1 HSPs)
chr5 (395-435)||(28532831-28532871)


Alignment Details
Target: chr6 (Bit Score: 535; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 7137772 - 7138380
Alignment:
Q  1 tataaatcccccttaaagtataataaatgacacaaaattggaag---aatttagcaagtcacagtaacttctgactaaaatatttctcttgacacaaatg 97  Q
    |||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7137772 tataaatcccccttaaagtataataaatgaaacaaaattggaagaagaatttagcaagtcacagtaacttctgactaaaatatttctcttgacaaaaatg 7137871  T
Q  98 tttctatctaactatctagctaggaaaatatttctcttgacaaaattttgttattatagtgcatccatgcttaatctgatctcttgggaaaactacaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7137872 tttctatctaactatctagctaggaaaatatttctcttgacaaaatgttgttattatagtgcatccatgcttaatctgatctcttgggaaaactacaaca 7137971  T
Q  198 cctcaaaatcttctagatagtatatcctccacccttctttttctgcaatgctcagcatctataacttctgttgttgtgtacacttggttgtgcaccaaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  7137972 cctcaaaatcttctagatagtatatcctccacccttctttttctgcaatgcccggcatctataacttctgttgtggtgtacacttggttgtgcaccaaaa 7138071  T
Q  298 ggtgaccaaggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgtgttggaacaatcaagagatgccaa 397  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  7138072 ggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgtgttggaacaatcgagagatgccaa 7138171  T
Q  398 agttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatgagat 497  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7138172 agttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatgagag 7138271  T
Q  498 attttgtggagaagcatgtcgaggtcaccatttccattttgtctgtccttttggtgcctaatttcgaatattactcttcttctaggctatggcttttacg 597  Q
    |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7138272 attttgcggagaagtatgtcgaggtcaccatttccattttgtttgtccttttggtgcctaatttcgaatattactcttcttctaggctatggcttttacg 7138371  T
Q  598 ttcatctca 606  Q
    |||||||||    
T  7138372 ttcatctca 7138380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 7134849 - 7135375
Alignment:
Q  1 tataaatcccccttaaagtataataaatgacacaaaattggaag---aatttagcaagtcacagtaacttctgactaaaatatttctcttgacacaaatg 97  Q
    |||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7134849 tataaatcccccttaaagtataataaatgaaacaaaattggaagaagaatttagcaagtcacagtaacttctgactaaaatatttctcttgacaaaaatg 7134948  T
Q  98 tttctatctaactatctagctaggaaaatatttctcttgacaaaattttgttattatagtgcatccatgcttaatctgatctcttgggaaaactacaaca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7134949 tttctatctaactatctagctaggaaaatatttctcttgacaaaatgttgttattatagtgcatccatgcttaatctgatctcttgggaaaactacaaca 7135048  T
Q  198 cctcaaaatcttctagatagtatatcctccacccttctttttctgcaatgctcagcatctataacttctgttgttgtgtacacttggttgtgcaccaaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  7135049 cctcaaaatcttctagatagtatatcctccacccttctttttctgcaatgcccggcatctataacttctgttgtggtgtacacttggttgtgcaccaaaa 7135148  T
Q  298 ggtgaccaaggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgtgttggaacaatcaagagatgccaa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7135149 ggtgaccaaggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgtgttggaacaatcgagagatgccaa 7135248  T
Q  398 agttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatgagat 497  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  7135249 agttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaaggagag 7135348  T
Q  498 attttgtggagaagcatgtcgaggtca 524  Q
    |||||||||||||||||||| ||||||    
T  7135349 attttgtggagaagcatgtcaaggtca 7135375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 285 - 526
Target Start/End: Original strand, 7132213 - 7132454
Alignment:
Q  285 ttgtgcaccaaaaggtgaccaaggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgtgttggaacaat 384  Q
    |||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  7132213 ttgttcaccaaagggtgaccaaggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacatgttggaacaat 7132312  T
Q  385 caagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttag 484  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132313 cgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttag 7132412  T
Q  485 tgggaaatgagatattttgtggagaagcatgtcgaggtcacc 526  Q
    ||||||| |||| |||||||||||||||||||| ||||||||    
T  7132413 tgggaaaggagagattttgtggagaagcatgtcaaggtcacc 7132454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 7116774 - 7116864
Alignment:
Q  107 aactatctagctaggaaaatatttctcttg-acaaaattttgttatt-atagtgcatccatgcttaatctgatctcttgggaaaactacaa 195  Q
    ||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7116774 aactatctagctaggaaaagatttctcttggaaaaaatgttgttatttatagtgcatccatgcttaatctgttctcttgggaaaactacaa 7116864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 7121846 - 7121936
Alignment:
Q  107 aactatctagctaggaaaatatttctcttg-acaaaattttgttatt-atagtgcatccatgcttaatctgatctcttgggaaaactacaa 195  Q
    ||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7121846 aactatctagctaggaaaagatttctcttggaaaaaatgttgttatttatagtgcatccatgcttaatctgttctcttgggaaaactacaa 7121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 7129151 - 7129241
Alignment:
Q  107 aactatctagctaggaaaatatttctcttg-acaaaattttgttatt-atagtgcatccatgcttaatctgatctcttgggaaaactacaa 195  Q
    ||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7129151 aactatctagctaggaaaagatttctcttggaaaaaatgttgttatttatagtgcatccatgcttaatctgttctcttgggaaaactacaa 7129241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 306 - 446
Target Start/End: Original strand, 6423834 - 6423974
Alignment:
Q  306 aggttgagttctttgtgcattggaaaacaatcggcaataagtaacagatcgttgttgtagagacacgtgttggaacaatcaagagatgccaaagttgtaa 405  Q
    ||||||||||||||| ||| ||| ||||||| ||| | ||||||||| ||| ||||| ||||| || || |  |||||   ||||| | ||||||||| |    
T  6423834 aggttgagttctttgagcaatgggaaacaattggccacaagtaacaggtcggtgttggagagaaacatgctataacaagtgagagaggtcaaagttgtta 6423933  T
Q  406 tgttttgggagaaagctcgcaacccatttgtaggaaaggtg 446  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  6423934 tgttttgggagaaagctcgcaacccatttgtgggaacggtg 6423974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 7174099 - 7174204
Alignment:
Q  109 ctatctagctaggaaaatatttctcttgacaaaattttgttattatagtgcatccatgcttaatctgatctcttgggaaaactacaacacctcaaaatct 208  Q
    ||||| ||||||| |||||||||||||| |||||||  |||||||||||||||||||||| ||||    ||||||||||||||||| |||| ||||||      
T  7174099 ctatcaagctagggaaatatttctcttggcaaaatt--gttattatagtgcatccatgctcaatc----ctcttgggaaaactacagcaccacaaaattc 7174192  T
Q  209 tctagatagtat 220  Q
    ||||||||||||    
T  7174193 tctagatagtat 7174204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 502
Target Start/End: Original strand, 19633026 - 19633228
Alignment:
Q  306 aggttgagttctttgtgcattggaaaacaatcggcaata---agtaacagatcgttgttgtagagacacgtgttggaacaatcaagagatgccaaagttg 402  Q
    ||||||||||||||   || ||| ||||||||||||||    |||||||| ||||||||||||||| || |||  |  |||   ||||| | ||||||||    
T  19633026 aggttgagttctttcaacaatgggaaacaatcggcaatgttgagtaacagttcgttgttgtagagaaacatgtgagtgcaagtgagagaggtcaaagttg 19633125  T
Q  403 taatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttg---gagatactaagcgatgtgagtttctttagtgggaaatgagatat 499  Q
    ||||| ||| |||||||||||||||||||||||| ||||||| |  |||||||   ||||||| ||| |||||||||||||| | |||| || |||| ||    
T  19633126 taatgctttcggagaaagctcgcaacccatttgtgggaaaggggaattggttgctagagatacaaagagatgtgagtttcttcaatgggtaacgagagat 19633225  T
Q  500 ttt 502  Q
    |||    
T  19633226 ttt 19633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 481
Target Start/End: Complemental strand, 8913480 - 8913372
Alignment:
Q  373 tgttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgt 472  Q
    ||||||||||||  ||||| | |||||||||||| ||||  || ||| || |||||||||| | |||||||||   ||||||||||||| | ||||||||    
T  8913480 tgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatgt 8913381  T
Q  473 gagtttctt 481  Q
    |||||||||    
T  8913380 gagtttctt 8913372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 6417110 - 6417189
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtga 474  Q
    |||||||||| | ||||||||||||||||| |||||||||   ||||| ||| |||||||||||||| |||| |||||||    
T  6417110 caaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtga 6417189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 28935357 - 28935406
Alignment:
Q  396 aaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggt 445  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  28935357 aaagttgtaatgttttgggagaaggctcgcaacccttttgtgggaaaggt 28935406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 6410713 - 6410765
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgt 447  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||||||    
T  6410713 caaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaaggtgt 6410765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 14809709 - 14809768
Alignment:
Q  387 agagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtg 446  Q
    ||||| ||||||||||||||||||||||||||| || ||||||| ||||  |||||||||    
T  14809709 agagaggccaaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaaaggtg 14809768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 10579136 - 10579088
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaag 443  Q
    ||||||||| |||||||||||||||||||| ||||||| ||| ||||||    
T  10579136 caaagttgttatgttttgggagaaagctcgtaacccatctgtgggaaag 10579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 6403578 - 6403645
Alignment:
Q  377 ggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaagg 444  Q
    ||||||||||||||| | |||||| || |  ||| |||||||||||||||||||||| || |||||||    
T  6403578 ggaacaatcaagagaggtcaaagtagtgacctttcgggagaaagctcgcaacccattagtgggaaagg 6403645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Original strand, 9412143 - 9412178
Alignment:
Q  396 aaagttgtaatgttttgggagaaagctcgcaaccca 431  Q
    ||||||||||| ||||||||||||||||||||||||    
T  9412143 aaagttgtaatattttgggagaaagctcgcaaccca 9412178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 6395555 - 6395603
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaag 443  Q
    |||||||||||| |||||||||| |||| ||||||||| ||| ||||||    
T  6395555 caaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 6395603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 7114214 - 7114290
Alignment:
Q  109 ctatctagctaggaaaatatttctcttgacaaaatt-ttgttattatagtgcatccatgcttaatctgatctcttgg 184  Q
    ||||||||||||   || ||||||||||  |||||  ||||||||| |||||||||||||||||| | |||||||||    
T  7114214 ctatctagctagttcaagatttctcttggaaaaatcattgttattagagtgcatccatgcttaatttaatctcttgg 7114290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 7122689 - 7122765
Alignment:
Q  109 ctatctagctaggaaaatatttctcttgacaaaatt-ttgttattatagtgcatccatgcttaatctgatctcttgg 184  Q
    ||||||||||||   || ||||||||||  |||||  ||||||||| |||||||||||||||||| | |||||||||    
T  7122689 ctatctagctagttcaagatttctcttggaaaaatcattgttattagagtgcatccatgcttaatttaatctcttgg 7122765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 51763436 - 51763344
Alignment:
Q  387 agagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 479  Q
    ||||||| |||||||||||| ||||| || ||| |||||||||||||||||||||||||  | || ||||||| | |||| ||||||||||||    
T  51763436 agagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtgatgtgagtttc 51763344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 13469683 - 13469608
Alignment:
Q  399 gttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtga 474  Q
    |||||| | ||||||||||||||||| |||||||||| |||||  ||| |||||||||||| | |||| |||||||    
T  13469683 gttgtattcttttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtga 13469608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 1657546 - 1657586
Alignment:
Q  396 aaagttgtaatgttttgggagaaagctcgcaacccatttgt 436  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  1657546 aaagttttaatgttttgagagaaagcttgcaacccatttgt 1657586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 395 - 502
Target Start/End: Complemental strand, 19467469 - 19467362
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatga 494  Q
    |||||||||||| ||||| | |||| |||||||||||||||  |||| |||||||  |||||||||| | || ||||||||||| || | ||||||||||    
T  19467469 caaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgagagatgtgagttttttcaatgggaaatga 19467370  T
Q  495 gatatttt 502  Q
    || |||||    
T  19467369 gagatttt 19467362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 7555217 - 7555278
Alignment:
Q  396 aaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttgga 457  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||| | |||| ||||||||||    
T  7555217 aaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 511
Target Start/End: Original strand, 10615731 - 10615847
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttctttagtgggaaatga 494  Q
    |||||||||||| ||||||||||||||||| ||||||||||  ||||  ||| |||||||||| ||| |||| |||||||  |||  |  ||||||| ||    
T  10615731 caaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacga 10615830  T
Q  495 gatattttgtggagaag 511  Q
    || |||||| |||||||    
T  10615831 gagattttgcggagaag 10615847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 553777 - 553817
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttg 435  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  553777 caaagttgtaatgttttgggagaaagctcgcaacccatttg 553817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 479
Target Start/End: Original strand, 1755571 - 1755655
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 479  Q
    |||||||||||| ||||| ||||||||| ||||||| || || |||| || |||||||||||||| | ||| |||||| ||||||    
T  1755571 caaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatgtaagtttc 1755655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 571330 - 571379
Alignment:
Q  377 ggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgca 426  Q
    ||||||||  ||||||| |||||||||||| ||||||||||| |||||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 53760323 - 53760291
Alignment:
Q  403 taatgttttgggagaaagctcgcaacccatttg 435  Q
    ||||||||||| |||||||||||||||||||||    
T  53760323 taatgttttggaagaaagctcgcaacccatttg 53760291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 479
Target Start/End: Complemental strand, 5766664 - 5766559
Alignment:
Q  374 gttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtg 473  Q
    ||||||||||  ||| || | ||||||||||||||| || |||||||||||||| ||||| | ||||| | || |||||||||| | | | |||||||||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  474 agtttc 479  Q
    ||||||    
T  5766564 agtttc 5766559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 478
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  374 gttggaacaatcaagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtg 473  Q
    ||||||||||  ||| || | ||||||||||||||| || |||||||||||||| ||||| | ||||| | || |||||||||| | | | |||||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  474 agttt 478  Q
    |||||    
T  14004240 agttt 14004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 17642973 - 17642889
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 479  Q
    |||||||||||| || |||||||||||| | |||||||| || |||| |||| | |||||||||| | | || ||||||||||||    
T  17642973 caaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtttc 17642889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 17635694 - 17635632
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttgtaggaaaggtgtgttggttgga 457  Q
    |||||||||||| ||  ||||||||||||| |||||||| || |||| |||| ||||||||||    
T  17635694 caaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttgga 17635632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 28246095 - 28246055
Alignment:
Q  396 aaagttgtaatgttttgggagaaagctcgcaacccatttgt 436  Q
    |||||| |||||||||| ||||||||| |||||||||||||    
T  28246095 aaagttttaatgttttgagagaaagcttgcaacccatttgt 28246055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 28532831 - 28532871
Alignment:
Q  395 caaagttgtaatgttttgggagaaagctcgcaacccatttg 435  Q
    |||||||||||||||||| || ||||||||||| |||||||    
T  28532831 caaagttgtaatgttttgtgaaaaagctcgcaatccatttg 28532871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University