View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8202_low_6 (Length: 464)
Name: NF8202_low_6
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Original strand, 42802414 - 42802857
Alignment:
| Q |
5 |
agagatgaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccacc |
104 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802414 |
agagaagaagaagaacaatactgatgcatcctcctcctcgatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccacc |
42802513 |
T |
|
| Q |
105 |
ccctcccctccccttcctttttattattaggtctgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtc |
204 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
42802514 |
ccctcccctccccttcctttttattattaggtctgtctatgtccatgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtc |
42802613 |
T |
|
| Q |
205 |
taatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42802614 |
taatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagag |
42802713 |
T |
|
| Q |
305 |
attctcttgagtgtaggtttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaa |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42802714 |
attctcttgagtgtaggtttggtatcactatggcgtgtcacaattatggtgatccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaa |
42802813 |
T |
|
| Q |
405 |
ttaaaatgagtcaccgtgattctagtatactcatgtaagttaag |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
42802814 |
ttaaaatgagtcaccgtgattctagtatacccatgtaagttaag |
42802857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 138 - 448
Target Start/End: Complemental strand, 25514990 - 25514665
Alignment:
| Q |
138 |
tgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta-----atcagagctctcaattgaagaatatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
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|
| T |
25514990 |
tgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattgaagagtatg |
25514891 |
T |
|
| Q |
233 |
tatctt------ttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt---- |
322 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
25514890 |
tatcttagtattttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgc |
25514791 |
T |
|
| Q |
323 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
422 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25514790 |
atggtatcactgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
25514691 |
T |
|
| Q |
423 |
attctagtatactcatgtaagttaag |
448 |
Q |
| |
|
||||||| |||| ||||||||||||| |
|
|
| T |
25514690 |
attctagcatacccatgtaagttaag |
25514665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 72 - 448
Target Start/End: Original strand, 25520303 - 25520710
Alignment:
| Q |
72 |
ctcccatcctcttttggaaatgcttaatccaccccctcccctcccctt---------cctttttattattaggtctgtctatgtctat------gtaagt |
156 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| |||||| | || ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25520303 |
ctcccatcctctcttggaaatgtttaatccaccccatccccttcgttttggagtctccctttttattattaggtctgtctatgtctatttctatgtaagt |
25520402 |
T |
|
| Q |
157 |
agtaattatctcaaatgtctcaaaatgaggtcggcattaagagta-----gtctaatcagagctctcaattgaagaatatgtatctt------ttcagtt |
245 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| |
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|
| T |
25520403 |
agtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctgagctctcaattgaagggtatgtatcttagtattttcagtt |
25520502 |
T |
|
| Q |
246 |
tcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggtttg----gtatcactatggcgtg |
341 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || || || |||||||| ||| ||| |
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|
| T |
25520503 |
tcaagaatgtaatctaagaatcaaaatgaaaattctatatttttccctccttttaagagattctcttaagtatatgtatgcatggtatcactgtggtgtg |
25520602 |
T |
|
| Q |
342 |
tcgcaatcatggtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagtatactcatgt |
440 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
25520603 |
tcacaatcatggtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtgattctagcatacccatgt |
25520702 |
T |
|
| Q |
441 |
aagttaag |
448 |
Q |
| |
|
|||||||| |
|
|
| T |
25520703 |
aagttaag |
25520710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
346 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
403 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
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|
| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 49093 - 49267
Alignment:
| Q |
142 |
tatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtctaatcagag----ctctcaattgaagaatatgtatc- |
236 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
49093 |
tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatct |
49192 |
T |
|
| Q |
237 |
--------ttttc----agtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctcctttt |
299 |
Q |
| |
|
||||| | |||||||||||| ||||||||||| ||||||||||||| |||||| | |||||||| |
|
|
| T |
49193 |
tagtattattttcggttaatttcaacaatgtaatctaagaatccaaatgaaaattctttattttccgctcctttt |
49267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 48972 - 49035
Alignment:
| Q |
50 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccccctcccct |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
48972 |
aaatgaagacagcagtaagtcactcccatcctcttttggaaatgcttaatacaccccctcccct |
49035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 25851757 - 25851705
Alignment:
| Q |
50 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatcca |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25851757 |
aaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaatcca |
25851705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 25851612 - 25851651
Alignment:
| Q |
54 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25851612 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
25851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 25851817 - 25851772
Alignment:
| Q |
11 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
56 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25851817 |
gaagaagaacaatactgatgcatcctcctcctaaatcacaaatgaa |
25851772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 448
Target Start/End: Original strand, 49316 - 49367
Alignment:
| Q |
397 |
aaaatcaattaaaatgagtcaccgtgattctagtatactcatgtaagttaag |
448 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
49316 |
aaaatcaattaaaatgagtcactgtgattctaacatatccatgtaagttaag |
49367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 25851548 - 25851593
Alignment:
| Q |
11 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
56 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
25851548 |
gaagaagaacaatattgatgcatcatcctcctcaatcacagatgaa |
25851593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
346 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
385 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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