View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8202_low_9 (Length: 421)
Name: NF8202_low_9
Description: NF8202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8202_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 93 - 396
Target Start/End: Complemental strand, 22352905 - 22352621
Alignment:
| Q |
93 |
gtattttccaaaccctaattataagcgttaatcgtaagtagtctattaaggtcgattattctctttgcattgnnnnnnntatataaaccaagcatactat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
22352905 |
gtattttccaaaccctaattataagcgttaatcgtaagtagtctattaaggtcgattattctctttgcattgaaaaaaaaatataaaccaaacatact-- |
22352808 |
T |
|
| Q |
193 |
caattgaaaactaacttaatagatgaagattctatgtagtgagaaaatctaacgcagtcgtgcaatcgtggaatgtttgatcaatcagacaactaaattt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22352807 |
----------------taatagatgaagattctatgtagtgagaaaatctaacgcagtcgtgta-tcgtggaatgtttgatcaatctgacaactaaattt |
22352725 |
T |
|
| Q |
293 |
caataacacaatttatctttaattatgcagttgaaatgtgagccgtccgatcaaaatcggacaccccacaatgcacaactacatcaagtacaatatttcc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
22352724 |
caataacacaatttatctttaattatgcagttgaaatgtgagccgtccgatcaaaaccgtacaccccaaaatgcacaattgtatcaaatacaatatttcc |
22352625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 365
Target Start/End: Complemental strand, 22347563 - 22347376
Alignment:
| Q |
178 |
aaccaagcatactatcaattgaaaactaacttaatagatgaagattctatgtagtgagaaaatctaacgcagtcgtgcaatcgtggaatgtttgatcaat |
277 |
Q |
| |
|
|||||| |||||||||||| ||||||||| || ||| | |||||||| |||| || ||| ||| |||||||||| | ||| ||||||| ||||| |
|
|
| T |
22347563 |
aaccaaacatactatcaatcgaaaactaaaataggggatcaggattctatctagttaggaaaattaaaacagtcgtgcatt-gtgaaatgtttaatcaac |
22347465 |
T |
|
| Q |
278 |
cagacaactaaat-ttcaataacacaatttatctttaattatgcagttgaaatgtgagccgtccgatcaaaatcggacaccccacaatg |
365 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||| ||||||||||||||| ||||||| |||| || ||||| | |||| |||||||| |
|
|
| T |
22347464 |
caaacaactaaaaattcaatcacacaatttatccataattatgcagttgatatgtgagtggtccaattaaaattgaacactccacaatg |
22347376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University