View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8203_low_11 (Length: 244)
Name: NF8203_low_11
Description: NF8203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8203_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10566754 - 10566517
Alignment:
| Q |
1 |
actttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttagaaac |
100 |
Q |
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| T |
10566754 |
actttctattgaatcaaagctatgccagtacgtcttttggtgagctactgcattctggtttggaagattcagaggtggaacagtataaatatttagaaac |
10566655 |
T |
|
| Q |
101 |
aaataatgatgcatgcttaaacaacacacataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacagaaca |
200 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566654 |
aaataatgatacatgcttaaacaacacatataaatcacttgatatgtcctggtttccagaatcaagatttgtttccgagactgcaattcaaaacagaaca |
10566555 |
T |
|
| Q |
201 |
gaaacattgtctacagttgtgtcttctgatgtccatct |
238 |
Q |
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|||||||||||||||||||||||||||| || |||||| |
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| T |
10566554 |
gaaacattgtctacagttgtgtcttctggtggccatct |
10566517 |
T |
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