View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8203_low_2 (Length: 415)
Name: NF8203_low_2
Description: NF8203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8203_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 31146451 - 31146827
Alignment:
| Q |
17 |
acgtttattgcaaaatcgtatagctactaaagataacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtatt |
116 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31146451 |
acgtttgttgcaaaatcgtatagttactaaagataacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtatt |
31146550 |
T |
|
| Q |
117 |
gaggatacggatcatctgtttgtgtcttgtgtcttttatagcaatctttggtatttgatttatgattggcttgagttttcttcggcaacatctccgagtc |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31146551 |
gaggatacgaatcatctgtttgtgtcttgtgtcttttatagcaatctttggtatttgatttatgattggcttgggttttcttcggcaacatctccgagtc |
31146650 |
T |
|
| Q |
217 |
ttttattgtatcttcgtcatttttgtggtctgggaggtgtttcaaataaactaaatttagcattcaatatgatttggttaggagctttttatgttatatg |
316 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
31146651 |
ttttattgcatcttcgtcatttttgtggtctgggaggtgtttcaaataaactaaattcagcgttcaatatgatttggttagcagctttttacgttatatg |
31146750 |
T |
|
| Q |
317 |
gaaagagagaaatggacgtatcttccaacaaaagaaaaatttcattgttttaattagtgagcaagttaaatgtctag |
393 |
Q |
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| T |
31146751 |
aaaagagagtaatggacgtatcttccaacaaaagaaaaattccattgttttaattagtgagcaagttaaatgtctag |
31146827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 23079811 - 23079881
Alignment:
| Q |
103 |
gatgtgggtgtattgaggatacggatcatctgtttgtgtcttgtgtcttttatagcaatctttggtatttg |
173 |
Q |
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| T |
23079811 |
gatgtgggtgtattgaggatatggatcatctgtttgtgtcttgtgtcttttatggcaattttgggtatttg |
23079881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 22228115 - 22228059
Alignment:
| Q |
272 |
tttagcattcaatatgatttggttaggagctttttatgttatatggaaagagagaaa |
328 |
Q |
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| T |
22228115 |
tttagctttcaagatgatttggttaacagatgtttatgtcatatggaaagagagaaa |
22228059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 18343148 - 18343273
Alignment:
| Q |
51 |
aacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtattgaggatacggatcatctgtttgtgtcttgtgtct |
150 |
Q |
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| T |
18343148 |
aacttaatgagacgacatgtgctttccaataatgatcaattttgcacaggcagatgtgggtgtaatgaggatagagatcatttgtttgtctcttgtgt-t |
18343246 |
T |
|
| Q |
151 |
tttatagcaatctttggtatttgattt |
177 |
Q |
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| T |
18343247 |
tttatggtaatatatggtatttaattt |
18343273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 22679953 - 22680100
Alignment:
| Q |
30 |
aatcgtatagctactaaagataacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtattgaggatacggatc |
129 |
Q |
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|||||||| |||| ||||| || ||| |||||| | | |||||| ||||||||||||| | ||||| ||| |||||| |||| |||||||| |||| |
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| T |
22679953 |
aatcgtattcctaccaaagacaatttattgagaccttaagtgctttccattaatgatcaactttgcacaggcggatgtgaatgtaatgaggatatagatc |
22680052 |
T |
|
| Q |
130 |
atctgtttgtgtcttgtgtcttttatagcaatctttggtatttgattt |
177 |
Q |
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| || ||||| |||||||| |||||| | ||| |||||| |||||||| |
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| T |
22680053 |
acctatttgtttcttgtgttttttatggtaatatttggtgtttgattt |
22680100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 177
Target Start/End: Complemental strand, 25977386 - 25977260
Alignment:
| Q |
51 |
aacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtattgaggatacggatcatctgtttgtgtcttgtgtct |
150 |
Q |
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|||||| |||||||||| |||||| ||||||||||||| | || || ||| |||||||||||| |||||||| |||||| ||||||| ||||||| | |
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| T |
25977386 |
aacttaatgagacgtcaagtgctttccattaatgatcaactttgtacaggcggatgtgggtgtactgaggatagagatcatatgtttgttacttgtgttt |
25977287 |
T |
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| Q |
151 |
tttatagcaatctttggtatttgattt |
177 |
Q |
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||||| | ||| |||| |||||||||| |
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| T |
25977286 |
tttatggtaatatttgatatttgattt |
25977260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 357
Target Start/End: Complemental strand, 24636803 - 24636698
Alignment:
| Q |
251 |
aggtgtttcaaataaactaaatttagcattcaatatgatttggttaggagctttttatgttatatggaaagagagaaatggacgtatcttccaacaaaag |
350 |
Q |
| |
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|||| ||||||||||| ||||||||||| |||| || ||||||||| | || ||||| ||||||||| |||||||| || ||| |||||||||||| |
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| T |
24636803 |
aggtttttcaaataaattaaatttagcactcaaaataatttggttaacaactgtttat-atatatggaaggagagaaacaaacttattttccaacaaaag |
24636705 |
T |
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| Q |
351 |
aaaaatt |
357 |
Q |
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|||||| |
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| T |
24636704 |
gaaaatt |
24636698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 1910624 - 1910769
Alignment:
| Q |
40 |
ctactaaagataacttagtgagacgtcatgtgcttaccattaatgatcatttatgcactggcagatgtgggtgtattgaggatacggatcatctgtttgt |
139 |
Q |
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|||| ||| |||||||| |||||||||| ||| || |||||| |||||| | ||||| || |||||||||||| |||| ||| ||||| || | ||| |
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| T |
1910624 |
ctaccaaaaataacttaatgagacgtcaagtgttttccattattgatcaactttgcacaggaggatgtgggtgtaatgagaatatagatcacctttatgt |
1910723 |
T |
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| Q |
140 |
gtcttgtgtcttttatagcaatctttggtatttgatttatgattgg |
185 |
Q |
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| T |
1910724 |
ttcttgtgttttttatggtaatatttagtatttgatttatggttgg |
1910769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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