View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8203_low_3 (Length: 400)
Name: NF8203_low_3
Description: NF8203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8203_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 14321040 - 14321438
Alignment:
| Q |
1 |
gaagcggagccacataccatcaactccctggaacaaatgtcagcaagctaaacagctctttcgaactccacaatccaagccaaacatagagaacaacgag |
100 |
Q |
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| T |
14321040 |
gaagcggacccacataccatcaactccctggaacaaatgtcaacaagctaaacggctctttctaac-ccacaatccaagccaaacatagagaacgacgag |
14321138 |
T |
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| Q |
101 |
atatcatattagtcagaatcaatcatgagatacatatattaagagggcaaacaactgaaagacgatgctcatcacagtccgccggtggcacctgaaacaa |
200 |
Q |
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| T |
14321139 |
atatcatattagtcaaaatcgatcatgagatacatatattaagggggcaaacaattgaaagacgatgctcatcatagtccgccggtggcaccttaaacaa |
14321238 |
T |
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| Q |
201 |
ccgcgactaatataaaaaacaccaacccacaagcacggaggcggtagatcttaaaacaaattgccaccaaccatccataaactagatacaacaccgcatc |
300 |
Q |
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| T |
14321239 |
ccgcgacgaatatcaaaaacaccaacccaccggcacggaggtggtagatcttaaaacaaattgtcaccaaccatccagaaactagatacaacaccgcatc |
14321338 |
T |
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| Q |
301 |
acgacccttgacaaacctttaagtcgactacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttttaccaccggtagaaaggcgacaca |
400 |
Q |
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| T |
14321339 |
gcgacccttgacaaacctttaagtcgacgacatctaagaggacaaccgaagaaggttgggaagtagccgatgcttgtaccaccggtagaaaggcgacaca |
14321438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 41907831 - 41907708
Alignment:
| Q |
238 |
gaggcggtagatcttaaaacaaattgccaccaaccatccataaactagatacaacaccgcatcacgacccttgacaaacctttaagtcgactacatctaa |
337 |
Q |
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||||||||| |||| |||||| || |||| |||||||| | ||||| ||||||||||| ||||| ||||||| |||||||| |||| || |||| || |
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| T |
41907831 |
gaggcggtaaatctgaaaacagatcgccagcaaccatctagaaactggatacaacaccatatcacaacccttggaaaacctttcagtcaacggcatcgaa |
41907732 |
T |
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| Q |
338 |
gaggacaaccgaagaaggttggga |
361 |
Q |
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| T |
41907731 |
gaggacaaccggagaatgttggga |
41907708 |
T |
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