View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8203_low_8 (Length: 285)
Name: NF8203_low_8
Description: NF8203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8203_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 32707580 - 32707845
Alignment:
| Q |
18 |
aaattaaatatgagaaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatatggaggggtgcaccta--------------aactca |
103 |
Q |
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| T |
32707580 |
aaattaaatatgagaaaccaaagctaactaaaactaatagtaaaataaacaaaagagccacatatggaggggtgcacctaaaccttaaatcctaaactca |
32707679 |
T |
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| Q |
104 |
taactctattgttttaataattaagacaataagcacttgaatgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatat |
203 |
Q |
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| T |
32707680 |
taactctattgtttcaataattaagacaataatcacttgaatgatgttggttcaatataaactacatatttatttttcgttgttttaaccaaattgatat |
32707779 |
T |
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| Q |
204 |
caattaagttattattccagtcgcgatcactttctaattttagcaaaataaaattttaaacattgc |
269 |
Q |
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| T |
32707780 |
caattaagatattattccagtcacgatcactttctaattttagcaaaataaaattttaaacattgc |
32707845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 29726250 - 29726183
Alignment:
| Q |
145 |
tgatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagt |
212 |
Q |
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| T |
29726250 |
tgatgtcggttcaatacaaactacatatttattttctgttgttttaatcaaactgctatcaattaagt |
29726183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 33060649 - 33060597
Alignment:
| Q |
168 |
catatttatttttcgttgttttaaccaaattgatatcaattaagttattattc |
220 |
Q |
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| T |
33060649 |
catatttatcttttgtcgttttgatcaaattgatatcaattaagttattattc |
33060597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 7779848 - 7779921
Alignment:
| Q |
146 |
gatgttggttcaatataaactccatatttatttttcgttgttttaaccaaattgatatcaattaagttattatt |
219 |
Q |
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| T |
7779848 |
gatgttggtttaatacgagctacatatttattttccatagttttaatcaaattgatatcagttaagtcattatt |
7779921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 14063598 - 14063638
Alignment:
| Q |
169 |
atatttatttttcgttgttttaaccaaattgatatcaatta |
209 |
Q |
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| T |
14063598 |
atatttatttttcgttgttttaatcaaacttatatcaatta |
14063638 |
T |
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