View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_1 (Length: 619)
Name: NF8204_high_1
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 106 - 603
Target Start/End: Complemental strand, 47089072 - 47088569
Alignment:
| Q |
106 |
gacaataatagaaaacatgctaagctgtgctcagaaggtgagta----------taaaaaagttcaatggtagtaatggtaggtttggtggtgaattctc |
195 |
Q |
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| T |
47089072 |
gacaataatagaaaacatgctaagctgtgctcagaaggtgagtagtgtgtactataaaaaagttcaatggtagtaatggtaggtttggtggtgaattctc |
47088973 |
T |
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| Q |
196 |
acgtggtagtgtatgcttaacaacaaattatacctggtagtgtatggtttaataacaaattagaccgtgtgagccttgatctgcggtctctcattatatg |
295 |
Q |
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| T |
47088972 |
acgtggtagtgtatgcttaacaacaaattatacctggtagtgtatggtttaataacaaattagaccgtgtgagccttgatctgcggtctctcattatatg |
47088873 |
T |
|
| Q |
296 |
atgaaatatcagtgaatatctagtgtataaattgaaaattgtcactagttttagcaaagcatacgagattcagctataaaaatagttttattcatgacag |
395 |
Q |
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| T |
47088872 |
atgaaatatcagtgagtatctagtgtataaattgaaaattgtcactagttttagcaaagcatacgagattcagctataaaaatagttttattcatgacag |
47088773 |
T |
|
| Q |
396 |
atcaaggaagcaaaaactaatataatctcctggccagtcatcaacaatcaacatatcatccatagggaagggaaaactaccaatgttaatatagtctggt |
495 |
Q |
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| T |
47088772 |
atcaaggaagcaaagactaatataatctcctggccagtcatcaacaatcaacatatcatccatagggaagggaaaactaccaatgttaatatagtctggt |
47088673 |
T |
|
| Q |
496 |
atgtgttgtgtttaattgtttatttgactatacaacataacatacatgtctctcgtgtctttattaagaggttcagctattggagaaatatgtgaagaaa |
595 |
Q |
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| T |
47088672 |
atgtgttgtgtttaattgtttatttgactatacaacataacatacatgtctctcgtgtctttattaagaggttcagctattggag----atgtgaagaaa |
47088577 |
T |
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| Q |
596 |
tttgaaat |
603 |
Q |
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| T |
47088576 |
tttgaaat |
47088569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 47088965 - 47088881
Alignment:
| Q |
16 |
agtgtatgcttaata-caaattatacctggtagtttatgctttaacaacaaattagaccgtgtgaaccttgatctgtggtgtctc |
99 |
Q |
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| T |
47088965 |
agtgtatgcttaacaacaaattatacctggtagtgtatggtttaataacaaattagaccgtgtgagccttgatctgcggtctctc |
47088881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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