View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_13 (Length: 335)
Name: NF8204_high_13
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 42889681 - 42889994
Alignment:
| Q |
18 |
ctatcatgataaatgaaacgatgcattcccgtttgaggctctatatatttgcatagaagtatttacttttttcattactctctttaatctcgattagagg |
117 |
Q |
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| T |
42889681 |
ctatcatgataaatgaaacgatgcattcccgtttgaggctctatatatttgcatagaagtatttacttttttcgttgctctctttgatctcgattagagg |
42889780 |
T |
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| Q |
118 |
aagaagagataaaaacatatctcacttcgctgaatatatttttaacttaaatgtaattttgctctctatttnnnnnnnntatgtttgcccccattttaaa |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||| |
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| T |
42889781 |
aagaagagat-aaaacatatctcacttcgctgaatatatttttaacttaaatgtaattttgatctttatttaaaaaaaatatttttgcccccattttaaa |
42889879 |
T |
|
| Q |
218 |
tgcatccatcaaaatctaatagcatcccacaaatttgcaaaatagcnnnnnnnnnntccttaaattctaatagcgtccatcaaaatcatcctccaattaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42889880 |
tgcatccatcaaaatctaatagcatcccacaaatttgcaaaatagcaaaaaaaatatccttaaattctaatagcgtccatcaaaatcatcctccaattaa |
42889979 |
T |
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| Q |
318 |
ctttttccatttcat |
332 |
Q |
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||||||||||||||| |
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| T |
42889980 |
ctttttccatttcat |
42889994 |
T |
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