View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_15 (Length: 305)
Name: NF8204_high_15
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 12829991 - 12830263
Alignment:
| Q |
10 |
tagataatactcgaaaatggtgaaaataccaagctttgatattgtaggtggaggggtggtgttgccttcggtgataaatatccaagattattagcaatgt |
109 |
Q |
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| T |
12829991 |
tagatgatactcgaaaatggtgaaaataccaagctttggtattgtaggtggaggggtggtgttgccttccgtgataaatatccaagattattcgcaatgt |
12830090 |
T |
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| Q |
110 |
taaaccaaaaagaggcaatggtggcggatatttgggtgtggaacggttcgtgagggagtggattttctcttggcgtcatcgcttttttgtctgggaggaa |
209 |
Q |
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| T |
12830091 |
taaaccaaaaagaggcaatggtggcggatatttgggtgtggaacggttcgtgagggagtggattttctcttggcgtcatcgcttttttgtctgggaggaa |
12830190 |
T |
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| Q |
210 |
caacttctagctaatcttttggatgatttggagggccatgggtggaatagtgaccaagacggatgggtgtgga |
282 |
Q |
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| T |
12830191 |
caacttctagctaatcttttggatgatttggagggccatgggtggaatagtgaccaagacggatgggtgtgga |
12830263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 32742545 - 32742501
Alignment:
| Q |
103 |
gcaatgttaaaccaaaaagaggcaatggtggcggatatttgggtg |
147 |
Q |
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| T |
32742545 |
gcaatgtcaaaccaaaaagaggcaaaggtggcggatgtttgggtg |
32742501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 6494782 - 6494925
Alignment:
| Q |
106 |
atgttaaaccaaaaagaggcaatggtggcggatatttgggtgtggaacggttcgtgagggagtggattttctcttggcgtcatcgcttttttgtctggga |
205 |
Q |
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| T |
6494782 |
atgtcaaatcaaaaagaagctatggtggcggatatttgggtgttgaacgtgttgttagggagtggaggttttcttggcgtcggcggttttttgtttggga |
6494881 |
T |
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| Q |
206 |
ggaacaacttctagctaatcttttggatgatttggagggccatg |
249 |
Q |
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| T |
6494882 |
ggaacaacttctcacaaatttgttggaagatttggagggtcatg |
6494925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 44514184 - 44514050
Alignment:
| Q |
85 |
aaatatccaagattattagcaatgttaaaccaaaaagaggcaatggtggcggatatttgggtgtggaacggt-tcgtgagggagtggattttctcttggc |
183 |
Q |
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| T |
44514184 |
aaatttccgagattatttgctatgtctaaccaaaaggaggcaacggtagcggagatttgggtgtctaatggtgtagagagggagtggagattctcttggc |
44514085 |
T |
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| Q |
184 |
gtcatcgcttttttgtctgggaggaacaacttcta |
218 |
Q |
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| T |
44514084 |
gtcgccgcttttttgtttgggaggaagaacttcta |
44514050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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