View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_21 (Length: 259)
Name: NF8204_high_21
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 51934536 - 51934305
Alignment:
| Q |
8 |
tgaattggaaaattatgaaataactacagattgaaatcattggttatattactaactatattatatcattcaagaatcagggattaaggcttactaatag |
107 |
Q |
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| T |
51934536 |
tgaattggaaaattatgaaataactacagattgaaatcattggttatattactgactat--tatatcattcaagaatcagggattaaggcttactaatag |
51934439 |
T |
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| Q |
108 |
tttggagcttttgatcttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatg |
207 |
Q |
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| T |
51934438 |
tttggagcttttgatcttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatg |
51934339 |
T |
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| Q |
208 |
tcatccttctagcttgtgatgcatttggggtact |
241 |
Q |
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| T |
51934338 |
tcatccttctagcttgtgatgcatttggggtact |
51934305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 12994718 - 12994607
Alignment:
| Q |
124 |
ttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
223 |
Q |
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| T |
12994718 |
ttgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttttggcatg |
12994619 |
T |
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| Q |
224 |
tgatgcatttgg |
235 |
Q |
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| T |
12994618 |
tgatgcatttgg |
12994607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 13069367 - 13069256
Alignment:
| Q |
124 |
ttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
223 |
Q |
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| T |
13069367 |
ttgcagaaaatactcgtgcagcctatcctatagagtacataccaaatgcaaagttaccatgtgttggacctcatccaaagaatgttattcttttggcatg |
13069268 |
T |
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| Q |
224 |
tgatgcatttgg |
235 |
Q |
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|||||||||||| |
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| T |
13069267 |
tgatgcatttgg |
13069256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 235
Target Start/End: Complemental strand, 28136825 - 28136714
Alignment:
| Q |
124 |
ttgcagagaatactcgtgcagcgtatcctatagagtacatacctaatgctaggataccatgtgttgctccccatgcaaagaatgtcatccttctagcttg |
223 |
Q |
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||||||| |||||||||||||| ||||| || |||||||| ||||| || | | |||||||||||| ||| || ||||||||||||| ||| | || || |
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| T |
28136825 |
ttgcagaaaatactcgtgcagcttatccaattgagtacattcctaacgcaaagttaccatgtgttggtcctcacccaaagaatgtcatacttttggcatg |
28136726 |
T |
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| Q |
224 |
tgatgcatttgg |
235 |
Q |
| |
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|||||||||||| |
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| T |
28136725 |
tgatgcatttgg |
28136714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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