View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8204_high_25 (Length: 239)

Name: NF8204_high_25
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8204_high_25
NF8204_high_25
[»] chr2 (5 HSPs)
chr2 (26-144)||(39103604-39103717)
chr2 (101-152)||(39112581-39112633)
chr2 (174-208)||(39103483-39103517)
chr2 (150-179)||(39103525-39103554)
chr2 (23-70)||(39112646-39112694)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 39103717 - 39103604
Alignment:
Q  26 aatgtagtaaagtatgaatatagatcaatcatcaccaaatagtgctaatactacaatattaagcttttcttcttcatatgcatggcatgaaaataaggtt 125  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |   |||||||||||||| ||  ||||||||||| |||||||||||||||    
T  39103717 aatgtagtaaagtttgaatctagatcaatcatcaccaaacagtgctaatcc---aatattaagcttttttt--tcatatgcatgtcatgaaaataaggtt 39103623  T
Q  126 ggaaatatgaatgataaaa 144  Q
    |||||||||||||||||||    
T  39103622 ggaaatatgaatgataaaa 39103604  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 39112633 - 39112581
Alignment:
Q  101 atatgcatggcatgaaaataaggttgg-aaatatgaatgataaaataaaaata 152  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39112633 atatgcatggcatgaaaataaggttggaaaatatgaatgataaaataaaaata 39112581  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 39103517 - 39103483
Alignment:
Q  174 acacaagaaagaggaagagggggaaataacgttgt 208  Q
    |||||||||||||||||||||||||||||||||||    
T  39103517 acacaagaaagaggaagagggggaaataacgttgt 39103483  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 179
Target Start/End: Complemental strand, 39103554 - 39103525
Alignment:
Q  150 atagttaccagcgattgaattgaaacacaa 179  Q
    ||||||||||||||||||||||||||||||    
T  39103554 atagttaccagcgattgaattgaaacacaa 39103525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 39112694 - 39112646
Alignment:
Q  23 agcaatgtagtaaagtatgaata-tagatcaatcatcaccaaatagtgc 70  Q
    |||||||||||||||| |||||  |||||||||||||| ||||||||||    
T  39112694 agcaatgtagtaaagtttgaattctagatcaatcatcatcaaatagtgc 39112646  T

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