View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_6 (Length: 436)
Name: NF8204_high_6
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 23947863 - 23947450
Alignment:
| Q |
1 |
aatggatgatgatgaattggaattagaatgttcaattgatgatccttcaatctcaattccaaggggtggacccatttacgtctccaatatgtctggccca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23947863 |
aatggatgatgatgaattggaattagaatgttcaattgatgatccttcaatctcaattccaaggggtggacccattttcgtctccaatatgtctggccca |
23947764 |
T |
|
| Q |
101 |
attgttagggttcctctttttcaggattcaattcttactcaacttcactctctccaatccgaattaccacctgatttgaatcatgatattagcgtcgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23947763 |
attgttagggttcctctttttcaggattcaattcttactcaacttcactctctccaatccgaattaccacctgattcgaatcatgatattagcgtcgatg |
23947664 |
T |
|
| Q |
201 |
atcttaaagtttttacagaggacgatttaatggacatggctttgaaacaagtctttcaaggtagagacaacaatcaagatcctcctaatgcagagttagt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23947663 |
atcttaaagtttttacagaggacgatttaatggacatggctttgaaacaagtctttcaaggtagagacaacaatcaagatcctcctaatgcagagttag- |
23947565 |
T |
|
| Q |
301 |
cacttcacttcacttcccctcttcttttttattctcttatatcattaattgattacgatggatgtagttgttctgaataatatagattgaatattggatt |
400 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23947564 |
----tcacatcacttcccctcttcttttttattctctgatatcattaattgattacgatggatgtagttgttctgaataatatagattgaatattggatt |
23947469 |
T |
|
| Q |
401 |
tggttgccggggtcagaag |
419 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
23947468 |
tggttgccggggtcagaag |
23947450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 34 - 259
Target Start/End: Complemental strand, 56241423 - 56241192
Alignment:
| Q |
34 |
aattgatgatccttcaatctcaattccaaggggtggacccatttacgtctccaatatgtctggcccaattgttagggttcctctttttcaggattcaatt |
133 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
56241423 |
aattgataatccttcaatttcaattccgaggggtggacccatttacgtctccaatatgtctggcccaattgttagggttcctctttttcaggattcactt |
56241324 |
T |
|
| Q |
134 |
cttactcaacttcactctctccaatccgaattaccacct---gatttgaatcatgatatta---gcgtcgatgatcttaaagtttttacagaggacgatt |
227 |
Q |
| |
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||| |||||||||||||||| ||||| |||||||||||| || || ||||||||| |||||||||||||||||||||||| |||||||| | |
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| T |
56241323 |
ctttctcaacttcactctctacaatctgaattaccacctcaacatcatgattatgatattaccgtcgtcgatgatcttaaagtttttactgaggacgagt |
56241224 |
T |
|
| Q |
228 |
taatggacatggctttgaaacaagtctttcaa |
259 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
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|
| T |
56241223 |
taatggacatgtctttgaaacaagtctttcaa |
56241192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 56241151 - 56241101
Alignment:
| Q |
344 |
attaattgattacgatggatgtagttgttctgaataatatagattgaatat |
394 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || |||||||||||||||| |
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|
| T |
56241151 |
attaattgattacgatggttggagttgttcttaaaaatatagattgaatat |
56241101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 16105077 - 16105490
Alignment:
| Q |
1 |
aatggatgatgatgaattggaattagaatgttcaattgatgatccttcaatctcaattccaaggggtggacccatttacgtctccaatatgtctggccca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16105077 |
aatggatgatgatgaattggaattagaattttcaattgatgatccttcaatctcaattccaaggggtggacccatttacgtctccaatatgtctggccca |
16105176 |
T |
|
| Q |
101 |
attgttagggttcctctttttcaggattcaattcttactcaacttcactctctccaatccgaattaccacctgatttgaatcatgatattagcgtcgatg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
16105177 |
attgttagggttcctctttttcaagattcaattcttactcaacttcactctctccaatccgaattaccacctgattcgaatcatgatatcagcgtcgatg |
16105276 |
T |
|
| Q |
201 |
atcttaaagtttttacagaggacgatttaatggacatggctttgaaacaagtctttcaaggtagagacaacaatcaagatcctcctaatgcagagttagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16105277 |
atcttaaagtttttacagaggacgatttaatggacatggctttgaaacaagtctttcaaggtagagacaacaatcaagatcctcctaatgcagagttag- |
16105375 |
T |
|
| Q |
301 |
cacttcacttcacttcccctcttcttttttattctcttatatcattaattgattacgatggatgtagttgttctgaataatatagattgaatattggatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||| |
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|
| T |
16105376 |
----tcacttcacttcccctcttcttttttattctctgatatcattaactgattatgatggatgtagttgttctgaacaatatagattgaatattgaatt |
16105471 |
T |
|
| Q |
401 |
tggttgccggggtcagaag |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16105472 |
tggttgccggggtcagaag |
16105490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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