View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_high_7 (Length: 396)
Name: NF8204_high_7
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 219 - 377
Target Start/End: Original strand, 20363841 - 20363996
Alignment:
| Q |
219 |
gtgtggatatcgaaggatgataatgtttatgaaagaggagagcttggttgcgactgtatggtgttatgttgcatgtttggaatattcactttcttaattt |
318 |
Q |
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| T |
20363841 |
gtgtggatatcgaaggatgataatgtttatgaaagaggag--cttggttacgactgtatg-tattatgttgcatgtttggaatattcactttcttaattt |
20363937 |
T |
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| Q |
319 |
attttcttcgacatatagaaggctattaaaggtagattcttgtagatccaatattgaac |
377 |
Q |
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| T |
20363938 |
gatttcttcgacatatagaaggctattaaaggtagattcttgtaaatcgaatattgaac |
20363996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 20371022 - 20371152
Alignment:
| Q |
14 |
gtttggtggtgtaggtaaagagttagggcagaaaaagaatgggctgaggaaacatttggttgagggagaaaaatttcattgaaagagtgagaaaaaataa |
113 |
Q |
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| T |
20371022 |
gtttggtggtgtaggtaaagagttagggaagaaaaagaatggactgaggaaacatttggttgagggagaaaaatttcattgaaagagtgaggaaaaaaaa |
20371121 |
T |
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| Q |
114 |
ataagaacgagggagaaatgttgagcacttt |
144 |
Q |
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| T |
20371122 |
ataagaacgagggagaaatgttgagcacttt |
20371152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 271 - 377
Target Start/End: Original strand, 20371625 - 20371731
Alignment:
| Q |
271 |
actgtatggtgttatgttgcatgtttggaatattcactttcttaatttattttcttcgacatatagaaggctattaaaggtagattcttgtagatccaat |
370 |
Q |
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| T |
20371625 |
actgtatggtgttctgttgcatgtttggaatattcactttcttaatttgatttcttcgacatatagaaggctattaaaggtagattcttgtaaatcaaat |
20371724 |
T |
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| Q |
371 |
attgaac |
377 |
Q |
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| T |
20371725 |
attgaac |
20371731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 20371182 - 20371225
Alignment:
| Q |
162 |
gtcatgcacgaaggctataactagagaaggttaagaataattct |
205 |
Q |
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| T |
20371182 |
gtcatgcacgaaggctataactagagaaggttaagaataattct |
20371225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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