View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_low_11 (Length: 360)
Name: NF8204_low_11
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 79 - 341
Target Start/End: Complemental strand, 40793082 - 40792820
Alignment:
| Q |
79 |
caaatagtggaatttgttggttacatcattgtttttgagaataacagatattttactattgacagtgtcactctaagaaagtacaaaaatattgtgaggg |
178 |
Q |
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| T |
40793082 |
caaatagtggaatttgttggttacatcattgtttttgagaataatagatattttactattgacagtgtcactctaagaaagtacaaaaatattgtgaggg |
40792983 |
T |
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| Q |
179 |
aaggcagaaaatttctaagaaaaacaataaatactcttgaaattgtggtttttcaaatcatctttgaaattgtaaaatttaaatttaatctgtccatcta |
278 |
Q |
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| T |
40792982 |
aaggcagaaaatttctaagaaaaacaataaatactcttgaaattgtggtttttcaaatgatctttgaaattgtaaaatttaaatttaatccgtccattta |
40792883 |
T |
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| Q |
279 |
ttggtatttacaagaactaaaataacattaaattaataatataagagataagtttgaaactaa |
341 |
Q |
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| T |
40792882 |
ttgatatttacaaggactaaaataacattaacttaataatataaaagacaagtttaaaactaa |
40792820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 40793152 - 40793107
Alignment:
| Q |
8 |
gagtttggtgttctagacattatatatatagaggacataaaggtggaa |
55 |
Q |
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| T |
40793152 |
gagtgtggtgttctagacattatatata--gaggacataaaggtggaa |
40793107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 40785360 - 40785306
Alignment:
| Q |
82 |
atagtggaatttgttggttacatcattgtt-tttgagaataacagatattttact |
135 |
Q |
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| T |
40785360 |
atagtggaaattgttggttacatcattgttgtttgagaataagagttgttttact |
40785306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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