View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_low_12 (Length: 344)
Name: NF8204_low_12
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 36677112 - 36677446
Alignment:
| Q |
1 |
attcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattccttatacaatttac |
99 |
Q |
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| T |
36677112 |
attcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattccttatacaatttac |
36677211 |
T |
|
| Q |
100 |
ttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36677212 |
ttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaa |
36677311 |
T |
|
| Q |
200 |
taataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggaattc |
299 |
Q |
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| T |
36677312 |
tcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggagttc |
36677411 |
T |
|
| Q |
300 |
agaaatgtcatatgttggaggagtttgatgtccat |
334 |
Q |
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| T |
36677412 |
ggaaatgtcatatgttggaggagtttgatgtccat |
36677446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 36687194 - 36687528
Alignment:
| Q |
1 |
attcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattccttatacaatttac |
99 |
Q |
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| T |
36687194 |
attcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattccttatacaatttac |
36687293 |
T |
|
| Q |
100 |
ttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaa |
199 |
Q |
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| T |
36687294 |
ttaaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaa |
36687393 |
T |
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| Q |
200 |
taataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggaattc |
299 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36687394 |
tcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggagttc |
36687493 |
T |
|
| Q |
300 |
agaaatgtcatatgttggaggagtttgatgtccat |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36687494 |
ggaaatgtcatatgttggaggagtttgatgtccat |
36687528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 36665428 - 36665304
Alignment:
| Q |
1 |
attcatttgaattttccattacattacat--cat--ttgcgaatcgtaacttgaaatatcatcttaa-aagcacccaaaatctaagattccttatacaat |
95 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| |||||||| |
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| T |
36665428 |
attcatttgaattttccattacattacattacatcattgtgaatcgtgacttgaaatatgatctttagaagcactcaaaatctaagattccatatacaat |
36665329 |
T |
|
| Q |
96 |
ttacttaaacataataacaactaac |
120 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
36665328 |
ttacttaaacataataaccactaac |
36665304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 36664931 - 36664849
Alignment:
| Q |
202 |
ataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactag |
284 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| |
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|
| T |
36664931 |
ataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactag |
36664849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 36704362 - 36704438
Alignment:
| Q |
205 |
ggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
281 |
Q |
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||||||||||||||||||||||||||| | |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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| T |
36704362 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
36704438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 36665022 - 36664986
Alignment:
| Q |
164 |
agtagatatatttgaagcacaataataattgtaaaat |
200 |
Q |
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|||||||||||| |||||||||||||| ||||||||| |
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| T |
36665022 |
agtagatatattcgaagcacaataatagttgtaaaat |
36664986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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