View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8204_low_13 (Length: 343)
Name: NF8204_low_13
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 41757348 - 41757666
Alignment:
| Q |
16 |
acatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757348 |
acatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatcta |
41757447 |
T |
|
| Q |
116 |
agcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatattcaagttca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41757448 |
agcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttca |
41757547 |
T |
|
| Q |
216 |
caagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757548 |
caagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtg |
41757647 |
T |
|
| Q |
316 |
gaagcaatatacacaggtt |
334 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41757648 |
gaagcaatatacacaggtt |
41757666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 41765434 - 41765749
Alignment:
| Q |
19 |
tcagagggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagc |
118 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||| |||| ||| |||||| | ||| ||| | || ||||||| ||||||||||||||| |
|
|
| T |
41765434 |
tcagagggattcaagccagtaaaagatgtatctattccagaaatcaatgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaaga |
41765533 |
T |
|
| Q |
119 |
gatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaa |
218 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41765534 |
gatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaa |
41765633 |
T |
|
| Q |
219 |
gtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41765634 |
gtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaagttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaa |
41765733 |
T |
|
| Q |
319 |
gcaatatacacaggtt |
334 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41765734 |
gcaatatacacaggtt |
41765749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
212 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
308 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University