View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8204_low_15 (Length: 320)
Name: NF8204_low_15
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 14044617 - 14044493
Alignment:
| Q |
97 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtacttggcattttttcacactctgttagtagaagattaggaactcattcattgc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044617 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtactttgcattttttcacactctgttagtagaagattaggaactcattcattgc |
14044518 |
T |
|
| Q |
197 |
agatttcatggaaaaatatatcata |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14044517 |
agatttcatggaaaaatatatcata |
14044493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 14044329 - 14044249
Alignment:
| Q |
223 |
tgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044329 |
tgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
14044249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 13930462 - 13930401
Alignment:
| Q |
21 |
aacacaacatgtaagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
82 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13930462 |
aacacaacatgtaagaacctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
13930401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 13930147 - 13930070
Alignment:
| Q |
225 |
tagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttc |
303 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
13930147 |
tagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tgtggcgccgccgcctccgtctgtttc |
13930070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 13476292 - 13476342
Alignment:
| Q |
32 |
taagaatctatcgttaatgtagaatttgttttgcactctgtttgcaacttt |
82 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
13476292 |
taagaatctatcgttaatgtagaattggtttcgcactctgtctgcaacttt |
13476342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
144 |
acttggcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
201 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||||| || ||||||||||||||||| |
|
|
| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 14044659 - 14044622
Alignment:
| Q |
21 |
aacacaacatgtaagaatctatcgttaatgtagaattt |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14044659 |
aacacaacatgtaagaatctatcgttaatgtagaattt |
14044622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University