View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8204_low_17 (Length: 294)

Name: NF8204_low_17
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8204_low_17
NF8204_low_17
[»] chr3 (6 HSPs)
chr3 (24-278)||(1642863-1643114)
chr3 (24-237)||(4554419-4554629)
chr3 (50-237)||(35272541-35272726)
chr3 (173-237)||(30075622-30075686)
chr3 (145-232)||(46984007-46984098)
chr3 (204-237)||(52851757-52851790)
[»] chr7 (2 HSPs)
chr7 (162-234)||(44491577-44491647)
chr7 (164-237)||(46178069-46178142)
[»] chr4 (1 HSPs)
chr4 (50-237)||(17534603-17534789)
[»] chr8 (2 HSPs)
chr8 (50-234)||(3772885-3773068)
chr8 (175-233)||(31419740-31419798)
[»] chr6 (1 HSPs)
chr6 (146-237)||(1728635-1728726)
[»] chr5 (1 HSPs)
chr5 (172-234)||(33621420-33621482)
[»] chr2 (3 HSPs)
chr2 (50-220)||(26152153-26152322)
chr2 (156-237)||(8513348-8513428)
chr2 (127-234)||(11980433-11980541)
[»] chr1 (2 HSPs)
chr1 (204-237)||(28648275-28648308)
chr1 (162-234)||(41972505-41972577)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 1643114 - 1642863
Alignment:
Q  24 catcctttgtttacagtttatcgatcgattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatc 123  Q
    ||||||||||||||||||  |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  1643114 catcctttgtttacagttatt---tcgattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtgcc 1643018  T
Q  124 tcactttatttggcgcctgttctttgtaactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  1643017 tcactttatttggcgcctgttctttgtaactcttgttcgatgattcatttttagcacaccttgtgcagggtggatcaacattgttattaatatatatcat 1642918  T
Q  224 tttggtttgtgcaa-nnnnnnncctaactttaaataaataaaggttccgcaattac 278  Q
    ||||||||||||||        |||||||||||||||||||||||| |||||||||    
T  1642917 tttggtttgtgcaattttttttcctaactttaaataaataaaggtt-cgcaattac 1642863  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 4554419 - 4554629
Alignment:
Q  24 catcctttgtttacagtttatcgatcgattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatc 123  Q
    ||||||||||||||||||  |   |||||||||||||||| |||||| | ||||||||||||| || |||||||||||||||||||||||  |||||  |    
T  4554419 catcctttgtttacagttatt---tcgattggtggaaacagccgctattatgtatgggtgttgtccagtaatttatttttggattgttttttatggtgcc 4554515  T
Q  124 tcactttatttggcgcctgttctttgtaactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcat 223  Q
    || ||||||||||| | || ||||| |||||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4554516 tctctttatttggcacatgctctttataactcttgtccgatgattaatttttagcacaccttgtgcagggtggatcatcgttgttattaatatatatcat 4554615  T
Q  224 tttggtttgtgcaa 237  Q
    ||||| ||||||||    
T  4554616 tttgggttgtgcaa 4554629  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 35272726 - 35272541
Alignment:
Q  50 gattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatctcactttatttggcgcctgttctttg 149  Q
    |||||||||||||||||| |||| ||||||||||||  ||||||| ||||||| | |||| ||  ||||||  | | |||| |||||| |||||  ||||    
T  35272726 gattggtggaaacacccgttactttgtatgggtgtttaccggtaacttattttcg-attggttatgatggtgcccctcttt-tttggcacctgtaatttg 35272629  T
Q  150 taactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    ||| | ||| || |||||||| |||| |||| |||| |||||| ||||||||  ||| ||||||||||||||||||||||||||||||    
T  35272628 taaattttgatcaatgattcactttttgcacgccttgtgcagggtggatcattgttggtattaatatatatcattttggtttgtgcaa 35272541  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 30075686 - 30075622
Alignment:
Q  173 tttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    |||||||| |||| ||| || ||  ||| ||||||||||||||||| ||||||||||||||||||    
T  30075686 tttagcacgccttgtgcggggtgcttcaccattgttattaatatatctcattttggtttgtgcaa 30075622  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 46984007 - 46984098
Alignment:
Q  145 ctttgtaactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgtt----attaatatatatcattttggtttg 232  Q
    |||||||| | ||| ||||||||||| ||||  ||| ||||||||||| ||||||||  || ||    ||||||||||||||||||||||||    
T  46984007 ctttgtaaattttgatcgatgattcactttttacacgccttatgcagggtggatcattgttattattaattaatatatatcattttggtttg 46984098  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 52851790 - 52851757
Alignment:
Q  204 ttgttattaatatatatcattttggtttgtgcaa 237  Q
    ||||| ||||||||||||||||||||||||||||    
T  52851790 ttgttgttaatatatatcattttggtttgtgcaa 52851757  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 44491577 - 44491647
Alignment:
Q  162 gatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtg 234  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||    
T  44491577 gatgattcatttttagcccaccttatgcaggatggatcatcgttgttatta--atatatcattttggtttgtg 44491647  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 46178142 - 46178069
Alignment:
Q  164 tgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    |||||||||||| |||| |||| |||||| || |||  | |||||||||||||| |||||||| ||||||||||    
T  46178142 tgattcattttttgcacgccttgtgcagggtgcatctccgttgttattaatataaatcatttttgtttgtgcaa 46178069  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 17534789 - 17534603
Alignment:
Q  50 gattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatctcactttatttggcgcctgttctttg 149  Q
    |||||||||| ||||||||| |  |||||| |||||   | | ||||||||||||  ||||||| | ||||  ||| ||||||| | | ||||  |||||    
T  17534789 gattggtggacacacccgctccattgtatgagtgttcatcagaaatttatttttgt-ttgttttgggtggtgcctccctttattagacacctgacctttg 17534691  T
Q  150 taactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    ||  | ||| ||| ||||||| ||||||||| |||| |||| | || |||||||| ||||||||||||||||||||||||||||||||    
T  17534690 tacattttgctcggtgattcacttttagcacgccttgtgcaagttgtatcatcatggttattaatatatatcattttggtttgtgcaa 17534603  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 3773068 - 3772885
Alignment:
Q  50 gattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatctcactttatttggcgcctgttctttg 149  Q
    |||||||||||||||||||| || ||||||||||||  || ||||| |||||| |  |||| || | ||||  |||  |||| ||||| ||||  |||||    
T  3773068 gattggtggaaacacccgctcctatgtatgggtgttcacccgtaatctattttcgc-ttgtattgggtggtgcctccatttacttggcacctgaactttg 3772970  T
Q  150 taactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtg 234  Q
    ||| | ||| | | ||||||| ||||||||| |||| |||||| ||  ||||| ||||||||||| |||||||||||| ||||||    
T  3772969 taaattttgattgttgattcacttttagcacgccttgtgcagggtgtctcatcgttgttattaatctatatcattttgatttgtg 3772885  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 31419740 - 31419798
Alignment:
Q  175 tagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgt 233  Q
    |||||||||||||||||||   |||| ||||||||||||||||||||||||||| ||||    
T  31419740 tagcacaccttatgcaggagaaatcaccattgttattaatatatatcattttggcttgt 31419798  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 1728635 - 1728726
Alignment:
Q  146 tttgtaactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    ||||||| | ||| ||||||||||| |||||||||  ||| |||||| || |||||| |||||||||||||||||||||||  |||||||||    
T  1728635 tttgtaaattttgatcgatgattcacttttagcacgacttgtgcagggtgtatcatcgttgttattaatatatatcattttcatttgtgcaa 1728726  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 33621420 - 33621482
Alignment:
Q  172 ttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtg 234  Q
    |||| |||| |||||||||||||| |||||| |||||||||||||| |||||||| |||||||    
T  33621420 ttttcgcacgccttatgcaggatgcatcatcgttgttattaatatacatcatttttgtttgtg 33621482  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 26152153 - 26152322
Alignment:
Q  50 gattggtggaaacacccgctactgtgtatgggtgttgcccggtaatttatttttggattgttttcgatggtatctcactttatttggcgcctgttctttg 149  Q
    |||||||||||||||||  | || |||||||||| |    ||||||||  |||| |||||||||  ||||| |||| ||||||||||| ||||  ||||     
T  26152153 gattggtggaaacaccccatcctttgtatgggtgcttaagggtaattt-cttttcgattgttttgaatggtgtctctctttatttggcacctggacttta 26152251  T
Q  150 taactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatat 220  Q
    ||| | ||| ||| |||| || |||| |||| |||| |||||| |  || ||| |||||||||||||||||    
T  26152252 taaattttgatcggtgatccacttttcgcacgccttgtgcagggtatattatcgttgttattaatatatat 26152322  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 8513348 - 8513428
Alignment:
Q  156 ttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtgcaa 237  Q
    ||||||| ||||||| ||| ||||| |||| ||| || || |||| | ||||||||| ||||| ||||||||||||||||||    
T  8513348 ttgttcggtgattcactttcagcacgccttgtgcggggtgcatcaacgttgttatta-tatatctcattttggtttgtgcaa 8513428  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 11980541 - 11980433
Alignment:
Q  127 ctttatttggcgcctgttctttgtaactcttgttcgatgattcatttttagcacaccttatgcaggatggatcatcattgttattaa-tatatatcattt 225  Q
    ||||||||||  ||||  |||||||| ||||| ||| ||||||| ||||  ||   ||| |||||| || |||||| |||||||||| ||||||||||||    
T  11980541 ctttatttgggacctggactttgtaattcttgatcggtgattcactttttacatgtcttgtgcagggtgtatcatcgttgttattaaatatatatcattt 11980442  T
Q  226 tggtttgtg 234  Q
    || ||||||    
T  11980441 tgatttgtg 11980433  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 28648275 - 28648308
Alignment:
Q  204 ttgttattaatatatatcattttggtttgtgcaa 237  Q
    ||||| ||||||||||||||||||||||||||||    
T  28648275 ttgttgttaatatatatcattttggtttgtgcaa 28648308  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 41972505 - 41972577
Alignment:
Q  162 gatgattcatttttagcacaccttatgcaggatggatcatcattgttattaatatatatcattttggtttgtg 234  Q
    ||||||||| |||| |||| |||| || ||| |||| ||  ||||||||||  ||||||||||||||||||||    
T  41972505 gatgattcactttttgcacgccttgtgtagggtggaccactattgttattatcatatatcattttggtttgtg 41972577  T

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