View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_low_19 (Length: 280)
Name: NF8204_low_19
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 31935882 - 31935633
Alignment:
| Q |
17 |
cactggatgtggagaggatcttaaccggaggtgtccctcggagctgagtgtggacggtggtgacgcgtgtaatagcgcgtgtggtgcgtttgggacaccg |
116 |
Q |
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| T |
31935882 |
cactggatgtggagaggatcttaaccggaggtgtccctcggagctgagagtggacggtggtgacgcgtgtaatagcgcgtgtggcgcgtttgggacaccg |
31935783 |
T |
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| Q |
117 |
gagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgtttaaatctgcttgtcctaaatcttatagctatg |
216 |
Q |
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| T |
31935782 |
gagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaaatgtttaaatctgcttgtcctaaatcttatagctatg |
31935683 |
T |
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| Q |
217 |
cgtttgatgatgctacgagtacttttacttgtactgctgcggatgattat |
266 |
Q |
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| T |
31935682 |
cgtttgatgatgctacgagtacttttacttgtactgctgcggatgattat |
31935633 |
T |
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Back To:
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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 27975539 - 27975359
Alignment:
| Q |
80 |
cgcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgtttggttcgccatcgagttgttcgccttcggtttattcggaa |
179 |
Q |
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| T |
27975539 |
cgcgtgtaagagcgcgtgtgaggcttttggtagtcctgagtattgttgtagtggcgcgtatggttcaccggcgacttgtagaccgtcgatttactcggaa |
27975440 |
T |
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| Q |
180 |
atgtttaaatctgcttgtcctaaatcttatagctatgcgtttgatgatgctacgagtacttttacttgtactgctgcggat |
260 |
Q |
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| T |
27975439 |
atgtttaaaaatgcttgccctagatcgtatagctacgcttatgatgatgcttcgagtacttttacttgtactgctgcggat |
27975359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 8810723 - 8810782
Alignment:
| Q |
81 |
gcgtgtaatagcgcgtgtggtgcgtttgggacaccggagtattgttgtagtggcgcgttt |
140 |
Q |
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| T |
8810723 |
gcgtgtaatagtgcttgtggcgcgtttgggaaaccggaatattgttgtaacggcgcgttt |
8810782 |
T |
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