View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8204_low_23 (Length: 256)

Name: NF8204_low_23
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8204_low_23
NF8204_low_23
[»] chr3 (3 HSPs)
chr3 (123-245)||(14993385-14993506)
chr3 (1-74)||(14993313-14993386)
chr3 (144-235)||(27741739-27741822)
[»] chr4 (6 HSPs)
chr4 (145-235)||(19657781-19657871)
chr4 (88-141)||(37320737-37320790)
chr4 (88-128)||(24784875-24784915)
chr4 (88-128)||(24823351-24823391)
chr4 (90-130)||(26677088-26677128)
chr4 (88-128)||(28149732-28149772)
[»] chr6 (2 HSPs)
chr6 (88-141)||(15150233-15150286)
chr6 (88-131)||(22577323-22577366)
[»] chr8 (1 HSPs)
chr8 (88-132)||(6443344-6443388)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-209)||(53873-53943)
[»] chr7 (2 HSPs)
chr7 (88-130)||(19289709-19289751)
chr7 (88-129)||(3959121-3959162)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 123 - 245
Target Start/End: Original strand, 14993385 - 14993506
Alignment:
Q  123 tgctaggctaagattcgtatggggagcatccaattctaaacccacacacccgtgcatcaaaacaaaatctaaaaacctacgggaaactgccacctaacaa 222  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14993385 tgctaggctaagattcgtatggggagcatccaattttaaacccatacacccgtgcatcaaaacaaaatctaaaaacctacgggaaac-gccacctaacaa 14993483  T
Q  223 ccaaaagcaaacttaacaccaaa 245  Q
     ||||||||||||||||||||||    
T  14993484 tcaaaagcaaacttaacaccaaa 14993506  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14993313 - 14993386
Alignment:
Q  1 aaaatcaaattttcactaatttttgcattaacacaaccattaaggttctactcttgatgattgtattgtccctg 74  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14993313 aaaatcaatctttcactaatttttgcattaacacaaccattaaggttctactcttgatgattgtattgcccctg 14993386  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 27741822 - 27741739
Alignment:
Q  144 gggagcatccaattctaaacccacacacccgtgcatcaaaacaaaatctaaaaa-cctacgggaaactgccacctaacaaccaaaagcaaact 235  Q
    |||||||||||||||||||||||        ||||||||||||||| ||||||| ||||| ||||||  ||||||||||||||||| ||||||    
T  27741822 gggagcatccaattctaaaccca--------tgcatcaaaacaaaaactaaaaagcctacaggaaaca-ccacctaacaaccaaaaacaaact 27741739  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 19657781 - 19657871
Alignment:
Q  145 ggagcatccaattctaaacccacacacccgtgcatcaaaacaaaatct-aaaaacctacgggaaactgccacctaacaaccaaaagcaaact 235  Q
    |||||| |||||| ||||| || ||||||||||||||||| ||||||| ||||||||||  |||||  ||||||||||||||||| ||||||    
T  19657781 ggagcacccaattataaactcatacacccgtgcatcaaaataaaatctaaaaaacctacacgaaac-accacctaacaaccaaaaacaaact 19657871  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 37320737 - 37320790
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctaggctaagattcgta 141  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| || |||||    
T  37320737 ttaaaatcacaatgagtcctaaccagtacaaggagtgctagactaggaatcgta 37320790  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 24784915 - 24784875
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctag 128  Q
    ||||||||||||||| |||| ||||||||||||| ||||||    
T  24784915 ttaaaatcacaatgaatcctaaccagtacaaggaatgctag 24784875  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 24823351 - 24823391
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctag 128  Q
    ||||||||||||||| |||| ||||||||||||| ||||||    
T  24823351 ttaaaatcacaatgaatcctaaccagtacaaggaatgctag 24823391  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 26677088 - 26677128
Alignment:
Q  90 aaaatcacaatgagtcctgaccagtacaaggagtgctaggc 130  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  26677088 aaaatcacaatgagtcctgaccagcacaagaactgctaggc 26677128  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 28149772 - 28149732
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctag 128  Q
    |||||||||||||||||||| ||||| ||||||| ||||||    
T  28149772 ttaaaatcacaatgagtcctaaccagcacaaggaatgctag 28149732  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 15150233 - 15150286
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctaggctaagattcgta 141  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||| || |||||    
T  15150233 ttaaaatcacaataagtcctgaccagcacaaagagtgctaggctaggaatcgta 15150286  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 22577323 - 22577366
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctaggct 131  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||    
T  22577323 ttaaaatcaaaatgagtcctaaccagcacaaggagtgctaggct 22577366  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 6443344 - 6443388
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctaggcta 132  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6443344 ttaaaatcacaatgaatcctaaccagcacaaggagtgctaggcta 6443388  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 53873 - 53943
Alignment:
Q  141 atggggagcatccaattctaaacccacacacccgtgcatcaaa-acaaaa-tctaaaaacctacgggaaac 209  Q
    |||||||||| |||||| ||||| || |||||||||||||||| |||||| || |||||||||| ||||||    
T  53873 atggggagcacccaattgtaaactcatacacccgtgcatcaaagacaaaattcaaaaaacctacaggaaac 53943  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 19289709 - 19289751
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctaggc 130  Q
    |||||||||||||||||||||||||| |||||  |||||||||    
T  19289709 ttaaaatcacaatgagtcctgaccagcacaagaggtgctaggc 19289751  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 3959162 - 3959121
Alignment:
Q  88 ttaaaatcacaatgagtcctgaccagtacaaggagtgctagg 129  Q
    ||||||||||||||| |||||||||| ||||| |||||||||    
T  3959162 ttaaaatcacaatgaatcctgaccagcacaagaagtgctagg 3959121  T

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