View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8204_low_27 (Length: 232)
Name: NF8204_low_27
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48753254 - 48753044
Alignment:
| Q |
1 |
tctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataatagaataaacatgttacacgaccgaaacagaaagaagtggcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753254 |
tctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataatagaataaacatgttacacgaccgaaacagaaagaagtggcaac |
48753155 |
T |
|
| Q |
101 |
tgacaatgacacacaacactgaatgtt--aaagaaggaaagaaggagagcttagaattctaactcattatatacgtatgattttataacaaaattgtgat |
198 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
48753154 |
tgacaatgacacacaacactgaatgttaaaaagaagga---aaggagagcttagaattctaactc-----------atgattttataccaaaattgtgat |
48753069 |
T |
|
| Q |
199 |
tttatctgacatgtagcatattact |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48753068 |
tttatctgacatgtagcatattact |
48753044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 52092460 - 52092686
Alignment:
| Q |
1 |
tctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataatagaa-taaacatgttacacga--------ccgaaacaga--aa |
89 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| | || |
|
|
| T |
52092460 |
tctgttttgaggtatgcaacagtgattgtcacacaaagtacaaaccagtcaaataatagaattaaacatgttacaagaagtgtattggaaaacataataa |
52092559 |
T |
|
| Q |
90 |
gaagtggcaactgacaatgacacacaacactgaatgttaaagaaggaaagaaggagagcttagaat--tctaactcattatatacgtatgattttataac |
187 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||| |||| | |
|
|
| T |
52092560 |
ataatggcaactgacaatgacacacaacactgaatgtt--------aaagaaggagagcttagaattctctaactcatgatttacgtatgattctatacc |
52092651 |
T |
|
| Q |
188 |
aaaattgtgattttatctgacatgtagcatattac |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
52092652 |
aaaattgtgattttatctcacatgtagcatattac |
52092686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 38462727 - 38462695
Alignment:
| Q |
40 |
acaaaccagtcaaataatagaataaacatgtta |
72 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
38462727 |
acaaaacagtcaaataatagaataaacatgtta |
38462695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University