View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8204_low_28 (Length: 216)

Name: NF8204_low_28
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8204_low_28
NF8204_low_28
[»] chr3 (2 HSPs)
chr3 (17-204)||(23031569-23031756)
chr3 (136-197)||(23144654-23144715)
[»] chr8 (1 HSPs)
chr8 (69-128)||(26762852-26762911)
[»] chr1 (1 HSPs)
chr1 (82-128)||(15867627-15867673)
[»] chr4 (2 HSPs)
chr4 (76-125)||(9957068-9957117)
chr4 (83-127)||(18966018-18966062)
[»] chr6 (2 HSPs)
chr6 (88-128)||(13407228-13407268)
chr6 (73-125)||(25094722-25094774)
[»] chr2 (1 HSPs)
chr2 (69-129)||(35196109-35196169)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 23031756 - 23031569
Alignment:
Q  17 cactttcaatataaaagaatattcattgtcaaaacatcacaaccagtcatacttagaagtaattctgattaaagtgaaacatttttaattatttgacgat 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23031756 cactttcaatataaaagaatgttcattgtcaaaacatcacaaccactcatacttagaagtaattctgattaaagtgaaacatttttaattatttgacgat 23031657  T
Q  117 tatgattgattgtatatgatgaaataaatcaggactcaccaaagcaccagaggccagagcatctcttgcatgatttgattctctgctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23031656 tatgattgattgtatatgatgaaataaatcaggactcaccaaagcaccagaggccagagcatctcttgcatgatttgattctctgctt 23031569  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 23144715 - 23144654
Alignment:
Q  136 tgaaataaatcaggactcaccaaagcaccagaggccagagcatctcttgcatgatttgattc 197  Q
    ||||| |||||||||||||||||   ||||| || ||||||||||||||||| |||||||||    
T  23144715 tgaaagaaatcaggactcaccaagtaaccagtggtcagagcatctcttgcataatttgattc 23144654  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 26762911 - 26762852
Alignment:
Q  69 ttagaagtaattctgattaaagtgaaacatttttaattatttgacgattatgattgattg 128  Q
    |||||||||||| |||||||||| |||| |||||| | || ||| |||||||||||||||    
T  26762911 ttagaagtaattatgattaaagtcaaacgtttttactgatctgaggattatgattgattg 26762852  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 15867627 - 15867673
Alignment:
Q  82 tgattaaagtgaaacatttttaattatttgacgattatgattgattg 128  Q
    |||||||||| ||||| ||||||| || |||||||||||||||||||    
T  15867627 tgattaaagtcaaacagttttaatgatatgacgattatgattgattg 15867673  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 9957117 - 9957068
Alignment:
Q  76 taattctgattaaagtgaaacatttttaattatttgacgattatgattga 125  Q
    ||||| ||||||||||  |||||||||| |||||||| ||||||||||||    
T  9957117 taattatgattaaagtctaacatttttatttatttgatgattatgattga 9957068  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 18966018 - 18966062
Alignment:
Q  83 gattaaagtgaaacatttttaattatttgacgattatgattgatt 127  Q
    ||||||||| ||||||||||||| || ||||||||||||| ||||    
T  18966018 gattaaagtcaaacatttttaatgatatgacgattatgatcgatt 18966062  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 13407268 - 13407228
Alignment:
Q  88 aagtgaaacatttttaattatttgacgattatgattgattg 128  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  13407268 aagttaaacatttttaataatttgacggttatgattgattg 13407228  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 25094722 - 25094774
Alignment:
Q  73 aagtaattctgattaaagtgaaacatttttaattatttgacgattatgattga 125  Q
    ||||| || |||||||||| |||||| |||||| ||| |||||||||||||||    
T  25094722 aagtacttatgattaaagtcaaacatgtttaatgattagacgattatgattga 25094774  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 35196109 - 35196169
Alignment:
Q  69 ttagaagtaattctgattaaagtgaaacatttttaattatttgacgattatgattgattgt 129  Q
    |||||||||||| ||||| |||| ||||||||||  |||||||||| | |||| |||||||    
T  35196109 ttagaagtaattatgattgaagtcaaacatttttgtttatttgacggtaatgagtgattgt 35196169  T

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