View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8204_low_3 (Length: 543)
Name: NF8204_low_3
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 512
Target Start/End: Original strand, 7375335 - 7375862
Alignment:
| Q |
9 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
7375335 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7375434 |
T |
|
| Q |
99 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
187 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7375435 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7375534 |
T |
|
| Q |
188 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
287 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7375535 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcttttacttttga |
7375634 |
T |
|
| Q |
288 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
7375635 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtct |
7375734 |
T |
|
| Q |
388 |
ttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtgatcaatgtaactaacttcaatgaaagtggcttccaaactctcttgacaagtgatggat |
484 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7375735 |
ttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatcaatgtaactaacttcaaagaaagtggcttccaaattctcttgacaagtgatggat |
7375834 |
T |
|
| Q |
485 |
cataaaattcagccaacagcaaagtaac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7375835 |
cataaaattcagccaacagcaaagtaac |
7375862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 458
Target Start/End: Complemental strand, 7278504 - 7278029
Alignment:
| Q |
9 |
gaagaatatggaggtagaagagaaggaagagagtgtgggaacaagtttgggggaggaaggaattgaggaaagtgtggatgtgaaagaaga---------- |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
7278504 |
gaagaagatggaggtagaagagaaggaagagagtgtgggaacaagtttggtggaggaaggaattaaggaaagtgtagatgtgaaagaagaggagggtaga |
7278405 |
T |
|
| Q |
99 |
-----aaatggatttgaggaggttaagg------aggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgaaaagatgatgg |
187 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7278404 |
attggaaatgaatttgaggaggagaattgttataaggaagaagatggagggaatagaaaaatgttgaaaaggatgatggaggacaatgagaagatgatgg |
7278305 |
T |
|
| Q |
188 |
aaatgatgtcacaattatttgagaggaatgaaaagcaaacaacacttcttacatctctcacacaaagggtggagcagcttgagagagcttttacttttga |
287 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
7278304 |
aaatgatggcacaattatttgagaggaatgagaagcaaacaacacttcttacatctcttacacaaagagtggagcagcttgagagagcatttacttttga |
7278205 |
T |
|
| Q |
288 |
caagttgaggaggaagaataagaagaggaggaatcttgatgccaaacacagacataatggttgcatttgatgacttttgctttctttaatgatcttgttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
7278204 |
caagttgaggaggaagaataagaagaggaggaatgttgatgccaaacacagacataatggttgcatttgatgacttttgctttgtttaatgatcttgtct |
7278105 |
T |
|
| Q |
388 |
ttgtaatgaa-tttgt--tctctcaatcatgtgtttattgtg--atcaatgtaactaacttcaatgaaagtggctt |
458 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
7278104 |
ttgtaatgaattttgttgtctctcaatcatgtgtttattgtgatatcagtgtaactaacttcaatgaaagtggctt |
7278029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University