View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8204_low_4 (Length: 488)
Name: NF8204_low_4
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 36031198 - 36031682
Alignment:
| Q |
1 |
agacataaccaaacccaccaacctaaacaccacataccacatttgagctgcaaaatcacatctcatgaataagtgcaaagtcgtttcctcaatgttgtca |
100 |
Q |
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| T |
36031198 |
agacataaccaaacccaccaacctaaacaccacataccacatttgagctgcaaaatcacatctcatgaataagtgcaaagtcgtttcctcaatgttgtca |
36031297 |
T |
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| Q |
101 |
cacaaattatctaaagacatcttgaggctcaatgataaactccccaatgaaat--------------tagtaggaattattcttatctaaaaagaagcta |
186 |
Q |
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| T |
36031298 |
cacaaattatcaaaagacatcttgaggttcaatgataaactccccaatgaaataagttagaattatttagtaggaattattcttatctaaaaagaagcta |
36031397 |
T |
|
| Q |
187 |
tactgatgaaaatcaattacctaagatggtgtaaaactagagaattgctttttcaacacaaattactctcaacctaaaaggcttctcccaagaagtttac |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031398 |
tactgatgaaaatcaattacctaagatggtgtaaaactagagaattgctttttcaacacaaattactctcaacctaaaaggcttctcccaagaagtttac |
36031497 |
T |
|
| Q |
287 |
cttcatggaaaacataggccgatttcaccgagaaacctataccggtatctggcgcctccattccttgaccttccacatgaaatatagaaactaaattcat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031498 |
cttcatggaaaacataggccgatttcaccgagaaacctataccggtatccggcgcctccattccttgaccttccacatgaaatatagaaactaaattcat |
36031597 |
T |
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| Q |
387 |
aagttttgtggcctaagcttcttcccaagtnnnnnnnnncctacttccaatagaaggtcctctcaacactccatatttagttgat |
471 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031598 |
aagttttgtggcctaatcttcttcccaagtaaaaaaaaccctacttccaatagaaggtcctctcaacactccatatttagttgat |
36031682 |
T |
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