View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8204_low_5 (Length: 450)
Name: NF8204_low_5
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8204_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 276 - 435
Target Start/End: Complemental strand, 45105270 - 45105111
Alignment:
| Q |
276 |
gtaaacggtggacatttactatttctagtaacagtacgatttacttaaacttttaaatatcatatttatacattaaaatatggtaatccgatataacatc |
375 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45105270 |
gtaaacggtagacttttactatttctagtaacagtacgatttacttaaacttttaaatatcatatttatacattaaaatatggtaatccgatataacatc |
45105171 |
T |
|
| Q |
376 |
aattttaattaactcatcnnnnnnnnnctctatgtatgtttggcatggatggtagtatat |
435 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
45105170 |
aattttaattaactcatctttttttttctctatgtatgtaaggcatggatggtagtatat |
45105111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 45105544 - 45105476
Alignment:
| Q |
11 |
aagaagtcaatatcacatatacccaaaagtaaatatattgttttttcttatcatcatgttattgtaaca |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45105544 |
aagaagtcaatatcacatatacccaaaagtaaatatattgttttttcttatcatcatgttatcgtaaca |
45105476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 45105400 - 45105339
Alignment:
| Q |
149 |
aaacttgttcacaatttcatctaagtttgacgttggtttgcttctcgtcttagtgcaccatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45105400 |
aaacttgttcacaatttcatctaagtttgacgttggttttcttctcgtcttagtgcaccatt |
45105339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University