View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8204_low_9 (Length: 364)

Name: NF8204_low_9
Description: NF8204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8204_low_9
NF8204_low_9
[»] chr2 (3 HSPs)
chr2 (13-343)||(9043850-9044173)
chr2 (158-314)||(7718613-7718769)
chr2 (195-314)||(10003516-10003640)
[»] chr8 (2 HSPs)
chr8 (133-314)||(40481380-40481563)
chr8 (195-240)||(11623790-11623835)
[»] chr3 (3 HSPs)
chr3 (195-240)||(29636473-29636518)
chr3 (157-240)||(44625019-44625102)
chr3 (258-314)||(33456728-33456784)
[»] chr7 (2 HSPs)
chr7 (256-339)||(44680118-44680201)
chr7 (195-286)||(27923656-27923747)
[»] chr4 (3 HSPs)
chr4 (256-314)||(21014707-21014765)
chr4 (256-317)||(35850221-35850282)
chr4 (247-343)||(25361724-25361820)
[»] chr6 (1 HSPs)
chr6 (218-314)||(8486720-8486817)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 9043850 - 9044173
Alignment:
Q  13 cagagatggcaacgtcaaggccgtatttgagacatacgaagaaaaagattgttctaagcttcnnnnnnntaagtcttaaattagaaccctaaaataaata 112  Q
    |||||||||||||||||  | |||||||||||||||||||||| |||| ||  |||  ||||       ||||||||||||||||||| ||||||||| |    
T  9043850 cagagatggcaacgtcagagtcgtatttgagacatacgaagaagaagactgacctagacttcaaaaaa-taagtcttaaattagaaccataaaataaaaa 9043948  T
Q  113 aataaagtagaggtctattcagaacgttgaaatcaccggataaaaatgaattagaaaaaccttacacaaattttgatgtttagttttctcactaggattt 212  Q
    |      ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||  |||||||    
T  9043949 a------tagaggtctattcagaatgttgaaattaccggataaaaatgaattagaaaaaccttatacagactttgatgtttagttttctcataaggattt 9044042  T
Q  213 gtcggatgttgatgcaaatgatctttttcataaatgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9044043 gtcggatgttgatgcaaatgatctttttcataaatgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttgtca 9044142  T
Q  313 aaatcataaattgttatccaaatatttcaat 343  Q
    |||||||||||||||||||||||||||||||    
T  9044143 aaatcataaattgttatccaaatatttcaat 9044173  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 314
Target Start/End: Original strand, 7718613 - 7718769
Alignment:
Q  158 atgaattagaaaaaccttacacaaattttgatgtttagttttctcactaggatttgtcggatgttgatgcaaatgatctttttcataaatgaaaatgctg 257  Q
    ||||| || ||||| ||| |||||||||| | |||   ||||||||  ||| |||  ||||||||||| |||||||| ||||||  || ||||| |||||    
T  7718613 atgaactaaaaaaatcttccacaaattttaaggttgcattttctcataagggtttaacggatgttgatacaaatgatatttttctaaattgaaagtgctg 7718712  T
Q  258 caaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaa 314  Q
    ||||| ||||  |||||||||| |||||   ||| |||||||||||||||| |||||    
T  7718713 caaatgtcttcgtcaaatgtgtagatgtgaacatttgaaattcttgagtttgtcaaa 7718769  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 10003516 - 10003640
Alignment:
Q  195 gttttctcactaggatttgtcggatgttgatgcaaatgatc----tttttcata-aatgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggc 289  Q
    |||||||||  || |||||||| ||||||||||||||||||    |||||| |  ||| |||||  ||||||| |||||  ||||||||||||||||  |    
T  10003516 gttttctcataagaatttgtcgaatgttgatgcaaatgatcattttttttcttccaattaaaatattgcaaatatctttgccaaatgtgttgatgtcaac 10003615  T
Q  290 atatgaaattcttgagtttctcaaa 314  Q
    || |||||||||||||||| |||||    
T  10003616 atttgaaattcttgagtttgtcaaa 10003640  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 314
Target Start/End: Complemental strand, 40481563 - 40481380
Alignment:
Q  133 agaacgttgaaatcaccggataaaaatgaattagaaaaaccttacacaaattttgatgtttagttttctcactaggatttgtcggatgttgatgcaaatg 232  Q
    |||| ||||||||||   ||||| ||||| | | ||||| ||| |||||||||| | |||  ||||||||   |||||||||| ||| ||||||||||||    
T  40481563 agaatgttgaaatcattcgataataatgattaaaaaaaatcttgcacaaattttaaggttgcgttttctcttaaggatttgtccgattttgatgcaaatg 40481464  T
Q  233 atctttt--tcataaatgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaa 314  Q
    |||||||  ||  || ||||| || ||||||| |||||  ||||| || ||||||||| || | |||||||||||||| |||||    
T  40481463 atctttttatctgaattgaaagtgttgcaaatgtctttgccaaatatgatgatgtcggtatttaaaattcttgagtttgtcaaa 40481380  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 11623835 - 11623790
Alignment:
Q  195 gttttctcactaggatttgtcggatgttgatgcaaatgatcttttt 240  Q
    |||||||||  |||||||||| ||||||||||||||||||| ||||    
T  11623835 gttttctcataaggatttgtcagatgttgatgcaaatgatcatttt 11623790  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 29636518 - 29636473
Alignment:
Q  195 gttttctcactaggatttgtcggatgttgatgcaaatgatcttttt 240  Q
    |||||||||  |||||||||||||||||||||||||||||||||||    
T  29636518 gttttctcataaggatttgtcggatgttgatgcaaatgatcttttt 29636473  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 44625102 - 44625019
Alignment:
Q  157 aatgaattagaaaaaccttacacaaattttgatgtttagttttctcactaggatttgtcggatgttgatgcaaatgatcttttt 240  Q
    ||||||||  ||||| ||| ||||||||||||||    ||||| |||  ||||||||||||||||||||||||||||| |||||    
T  44625102 aatgaatttaaaaaatcttgcacaaattttgatgccatgttttttcataaggatttgtcggatgttgatgcaaatgattttttt 44625019  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 33456728 - 33456784
Alignment:
Q  258 caaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaa 314  Q
    ||||| ||||| |||||||||||||||||||||| ||||||  |||||||| |||||    
T  33456728 caaatatctttgtcaaatgtgttgatgtcggcatttgaaatatttgagtttgtcaaa 33456784  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 44680118 - 44680201
Alignment:
Q  256 tgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaaatcataaattgttatccaaatattt 339  Q
    ||||||| ||||| |||||||||||| ||||   || ||| |||||||||||| |||||  |||| ||||||||||||||||||    
T  44680118 tgcaaatatctttgtcaaatgtgttggtgtcataatttgacattcttgagtttgtcaaaggcatatattgttatccaaatattt 44680201  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 27923656 - 27923747
Alignment:
Q  195 gttttctcactaggatttgtcggatgttgatgcaaatgatctttttcataaatgaaaatgctgcaaatctctttatcaaatgtgttgatgtc 286  Q
    |||||||||  || |||| | ||||||||||||||||  ||||||||   | ||||| |  ||||||| |||||||||||||||||||||||    
T  27923656 gttttctcagaagaatttcttggatgttgatgcaaatagtctttttctgtattgaaagtattgcaaatatctttatcaaatgtgttgatgtc 27923747  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 21014707 - 21014765
Alignment:
Q  256 tgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaa 314  Q
    ||||||| ||||| |||||| |||||||||| |||| |||||||||||||||| |||||    
T  21014707 tgcaaatgtctttgtcaaatatgttgatgtcagcatttgaaattcttgagtttgtcaaa 21014765  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 35850282 - 35850221
Alignment:
Q  256 tgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaaatc 317  Q
    ||||||| |||||  ||||||||||||| || |||| |||||||||||| ||| ||||||||    
T  35850282 tgcaaatttctttgccaaatgtgttgatttcagcatttgaaattcttgaatttatcaaaatc 35850221  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 25361820 - 25361724
Alignment:
Q  247 tgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaaatcataaattgttatccaaatatttcaat 343  Q
    ||||| ||| |||||| |||||  ||||| |||  ||||| |||| |||||||||||||||| |||||  || |||||||||| | ||| |||||||    
T  25361820 tgaaagtgccgcaaatgtctttgccaaatatgtcaatgtcagcatttgaaattcttgagtttatcaaagccacaaattgttattcgaatgtttcaat 25361724  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 314
Target Start/End: Original strand, 8486720 - 8486817
Alignment:
Q  218 atgttgatgcaaatgatc-tttttcataaatgaaaatgctgcaaatctctttatcaaatgtgttgatgtcggcatatgaaattcttgagtttctcaaa 314  Q
    |||||||||||||||||| ||||| | || ||||| || ||||||  ||||| |||||| |||||||||  |||| || ||| ||||||||| |||||    
T  8486720 atgttgatgcaaatgatctttttttagaattgaaagtgttgcaaaaatctttgtcaaatatgttgatgttagcatttggaatccttgagtttgtcaaa 8486817  T

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