View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8205_high_1 (Length: 516)
Name: NF8205_high_1
Description: NF8205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8205_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 46911923 - 46911418
Alignment:
| Q |
1 |
aagtggttgtacaaatatcattta-gatttattagtgatgataattaacaaatatata--gtaatgccaagtggggacaaccactgagcacaagacaaac |
97 |
Q |
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| T |
46911923 |
aagtgattgtaaaaatatcatttctgatttatcagtgatgatagttaacaaatatatatagtaatgccaagtggggacaaccactgagcacaagacaaac |
46911824 |
T |
|
| Q |
98 |
aatccttccattctttaattttttacaaacaaaggttatttcataggctagtgcacatgaaacagaaaactaaggaaagaaacaaaatggtatctaataa |
197 |
Q |
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| T |
46911823 |
aatccttccattctttaattttttacaaacaaaggttatttcataggctagtgcacatgaaacagaaaactaaggaaagaaacaaaatggtatctaataa |
46911724 |
T |
|
| Q |
198 |
ttcagtgagacaaacaaacaaaccacagtgacatcacatatcacaagtagccgaaggtaataat-aagttaacaataattttatggacggaccaatggac |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46911723 |
ttcagtgagacaaacaaacaaaccacagtgacatcacatatcacaagtagccgaaggtaataataaagttaacaataattttatggacggaccaatggac |
46911624 |
T |
|
| Q |
297 |
cattatatcacattcaccatcttctgagagatatacattggtaattccttgacccttagagataattaataaataacttttagcaaataattaataacta |
396 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46911623 |
cataatatcacattcaccatcttctgagagatatacattggtaattccttgacccttagagataattaataaataacttttagcaaataattaataacta |
46911524 |
T |
|
| Q |
397 |
atacacagtaaacttaatgaggctagacaggaaccctccaaagaacatag--gacaattatgtaaggtcttgacagtattggaggaccactttgctactt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46911523 |
atacacagtaaacttaatgaggctagacaggaaccctccaaagaacatagatgacaattatgtaaggtcttgacagtattggaggaccactttgctactt |
46911424 |
T |
|
| Q |
495 |
atatac |
500 |
Q |
| |
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|||||| |
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| T |
46911423 |
atatac |
46911418 |
T |
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