View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8205_low_4 (Length: 226)
Name: NF8205_low_4
Description: NF8205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8205_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 35443121 - 35442988
Alignment:
| Q |
75 |
ttctcgtggttttatgcagttggaaattttgtatagaatgaggttttattttttgattagtaaatagtagatagggtttgtttggttacaaaatgctaaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35443121 |
ttctcgtggttttatgcagttggaaattttgtatagaatgaggttttattttttgattagtaaatagtagatagggtttgtttggttacaaaatgctaaa |
35443022 |
T |
|
| Q |
175 |
aatacatatatttatgtaaaataagtggttaaat |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
35443021 |
aatacatatatttatttaaaataagtggttaaat |
35442988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 3415671 - 3415603
Alignment:
| Q |
7 |
tggagaagcagagagcagtgttggatggaggcaatagcctaatagagtatccacctttggagatctcat |
75 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3415671 |
tggagaaccagaaagcagtgttggatggaggcaatagcctaatagagtatccacctttggagatctcat |
3415603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 16780329 - 16780358
Alignment:
| Q |
174 |
aaatacatatatttatgtaaaataagtggt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16780329 |
aaatacatatatttatgtaaaataagtggt |
16780358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University