View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_high_16 (Length: 238)

Name: NF8206A_high_16
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_high_16
NF8206A_high_16
[»] chr8 (12 HSPs)
chr8 (19-217)||(17722420-17722608)
chr8 (19-205)||(35948827-35949013)
chr8 (19-205)||(7956340-7956516)
chr8 (19-205)||(44223327-44223503)
chr8 (68-205)||(9505015-9505153)
chr8 (47-152)||(3767684-3767789)
chr8 (47-205)||(16570890-16571047)
chr8 (68-205)||(32321799-32321936)
chr8 (47-197)||(34760834-34760975)
chr8 (30-104)||(9040513-9040587)
chr8 (153-205)||(9040427-9040479)
chr8 (120-156)||(8266063-8266099)
[»] chr1 (12 HSPs)
chr1 (19-205)||(16584864-16585050)
chr1 (19-151)||(25785805-25785937)
chr1 (19-197)||(8083994-8084173)
chr1 (19-181)||(1161433-1161594)
chr1 (19-150)||(11619973-11620104)
chr1 (19-203)||(18461120-18461295)
chr1 (47-205)||(42009997-42010155)
chr1 (47-197)||(512961-513111)
chr1 (113-206)||(32678514-32678607)
chr1 (115-197)||(8414674-8414756)
chr1 (22-160)||(11911629-11911768)
chr1 (115-182)||(27320560-27320627)
[»] chr4 (7 HSPs)
chr4 (26-205)||(23107918-23108097)
chr4 (19-202)||(4413456-4413640)
chr4 (19-206)||(24466315-24466502)
chr4 (19-183)||(28319290-28319454)
chr4 (68-197)||(53393204-53393333)
chr4 (68-202)||(8606181-8606315)
chr4 (116-205)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (29-206)||(16746550-16746727)
chr5 (33-205)||(31895896-31896068)
chr5 (19-202)||(19947711-19947894)
chr5 (19-146)||(16746421-16746548)
chr5 (68-183)||(1498243-1498358)
chr5 (54-197)||(29126091-29126234)
chr5 (157-195)||(41092125-41092163)
chr5 (114-174)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (19-206)||(580-767)
[»] chr7 (13 HSPs)
chr7 (19-205)||(7352370-7352555)
chr7 (19-206)||(39695086-39695268)
chr7 (19-144)||(46993309-46993434)
chr7 (22-152)||(7994998-7995128)
chr7 (19-150)||(11727328-11727449)
chr7 (47-205)||(48070614-48070772)
chr7 (68-205)||(3996991-3997128)
chr7 (69-173)||(46265353-46265457)
chr7 (33-173)||(2922986-2923125)
chr7 (114-197)||(12013026-12013109)
chr7 (54-205)||(27226938-27227089)
chr7 (141-197)||(12471855-12471911)
chr7 (141-193)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (19-205)||(46655514-46655701)
chr3 (54-202)||(44471020-44471168)
chr3 (30-206)||(11503337-11503513)
chr3 (54-206)||(30554574-30554726)
chr3 (108-197)||(46892612-46892701)
chr3 (68-169)||(27524053-27524154)
chr3 (54-150)||(779533-779629)
chr3 (109-197)||(23307117-23307205)
chr3 (140-203)||(12937849-12937912)
chr3 (47-205)||(26757593-26757751)
chr3 (74-160)||(44285605-44285691)
chr3 (105-205)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (26-205)||(31111413-31111592)
chr2 (19-152)||(4638207-4638340)
chr2 (26-203)||(13852276-13852453)
chr2 (47-205)||(29109190-29109348)
chr2 (21-193)||(3919857-3920029)
chr2 (19-86)||(36009278-36009345)
chr2 (86-205)||(12893980-12894099)
chr2 (74-160)||(37630375-37630461)
chr2 (30-152)||(38607020-38607141)
chr2 (68-197)||(5526225-5526353)
chr2 (119-206)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (19-145)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (69-202)||(7176529-7176662)
chr6 (68-175)||(23301441-23301548)
chr6 (115-205)||(11971456-11971546)
chr6 (47-175)||(23300455-23300583)
chr6 (48-150)||(7551423-7551525)
chr6 (74-195)||(9826747-9826868)
chr6 (68-145)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (115-205)||(33729-33819)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 17722420 - 17722608
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722420 atcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 17722519  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttgat 217  Q
    ||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  17722520 gaaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttgat 17722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 35949013 - 35948827
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  35949013 atcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaacc 35948914  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948913 gaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 7956340 - 7956516
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacc 7956439  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
     ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956440 aaacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 44223327 - 44223503
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| ||||     
T  44223327 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaact 44223426  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223427 gaaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 9505153 - 9505015
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactt 166  Q
    ||||| |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||    
T  9505153 gaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattt 9505054  T
Q  167 tcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||| |||||||| | ||||||||| |||||||    
T  9505053 tcggtttcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  147 gtttgg 152  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| |||||||  ||||| ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 32321936 - 32321799
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||    
T  32321936 gaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggtttt 32321837  T
Q  168 cggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||  ||||||| ||||||||||  |||||||    
T  32321836 cggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  30 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcgg 104  Q
    ||||||||||||||  ||||||| |||| ||||| |  |||||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  153 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  120 aaccaaacaaggttggatattttttcggtttggttcg 156  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 16584864 - 16585050
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaacc 16584963  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584964 gaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 25785937 - 25785805
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  25785937 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaacc 25785838  T
Q  119 gaaccaaacaaggttggatattttttcggtttg 151  Q
    |||||||||||||| ||||||||||||||||||    
T  25785837 gaaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 8084173 - 8083994
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8084173 atcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacc 8084074  T
Q  119 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
     ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084073 aaaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 1161433 - 1161594
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaacc 1161532  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 181  Q
    |||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161533 gaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 11620104 - 11619973
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||     
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaact 11620005  T
Q  119 gaaccaaacaaggttggatattttttcggttt 150  Q
    |||||||||||| | ||||||||||| |||||    
T  11620004 gaaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 18461295 - 18461120
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||| |||||    
T  18461295 atcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaacc 18461196  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 203  Q
    |||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461195 gaactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||| |||||  ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 513111 - 512961
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| |||||| | ||| | || |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| |||||||    
T  513111 gatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcg 513012  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    |||||||||| |||||  ||| | ||||||  ||||| | |||||||||||    
T  513011 gtttggttcgatttgggtttttgatttcatcagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  113 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  115 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 11911768 - 11911629
Alignment:
Q  22 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 121  Q
    ||||| ||||||||||||||   | ||| || |||| ||||| || |||| ||| |||||||||||||||| | || |||||| | |||||  |||||||    
T  11911768 atcggtttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaa 11911669  T
Q  122 ccaaacaaggttggata-ttttttcggtttggttcggttt 160  Q
    ||||||||||| ||||| ||||||||  |||||| |||||    
T  11911668 ccaaacaaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  115 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 182  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  26 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 125  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  126 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 4413640 - 4413456
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  4413640 atcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaacc 4413541  T
Q  119 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 202  Q
    |||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413540 gaaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 24466315 - 24466502
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  24466315 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 24466414  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466415 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 28319290 - 28319454
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||| ||||| |||||| | |||||  |||||||||| ||||| |||||||||||||||| || |||| ||| |||| |||||||  |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaacc 28319389  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 183  Q
    ||||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319390 gaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 53393204 - 53393333
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggatttt 53393303  T
Q  168 cggtttcattggttttattcgaaccactta 197  Q
    ||||||||| |||||| | |||||||||||    
T  53393304 cggtttcatcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 202
Target Start/End: Original strand, 8606181 - 8606315
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| |    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactat 8606280  T
Q  168 cggtttcattggttttattcgaaccacttaaaccc 202  Q
    | ||||| | |||||| | ||||||||||| ||||    
T  8606281 cagtttcgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  116 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  29 tggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 128  Q
    |||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  129 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  33 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 132  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  133 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 19947894 - 19947711
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||| | ||||||| ||| |||| ||||||||||     
T  19947894 atcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaact 19947795  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 202  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947794 gaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 16746421 - 16746548
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16746421 atcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaacc 16746520  T
Q  119 gaaccaaacaaggttggatattttttcg 146  Q
    ||||||||||||||||||||||||||||    
T  16746521 gaaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 1498243 - 1498358
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    |||||||||  ||||| |||||||| | || |||| | | |||||  |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||    
T  1498243 gaaccaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggatttt 1498342  T
Q  168 cggtttcattggtttt 183  Q
    ||||||||| ||||||    
T  1498343 cggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  54 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 153  Q
    |||||||||||   ||||||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  154 tcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  157 gtttggactttcggtttcattggttttattcgaaccact 195  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  114 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 174  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 580 - 767
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  580 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 679  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  680 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 7352370 - 7352555
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  7352370 atcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaacc 7352468  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
     ||||||| || || |||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352469 aaaccaaataaagtcggatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 39695268 - 39695086
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaacc 39695169  T
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695168 gaaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 46993434 - 46993309
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||||   |||||||||    
T  46993434 atcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaacc 46993335  T
Q  119 gaaccaaacaaggttggatatttttt 144  Q
    || ||||||||||| | |||||||||    
T  46993334 gacccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 7995128 - 7994998
Alignment:
Q  22 atcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaa 121  Q
    ||||||||||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||  |||||||    
T  7995128 atcggattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaa 7995029  T
Q  122 ccaaacaaggttggatattttttcggtttgg 152  Q
    |||||||||||   |||||||||| ||||||    
T  7995028 ccaaacaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 11727328 - 11727449
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||||           |||||||||||||||    
T  11727328 atcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaacc 11727417  T
Q  119 gaaccaaacaaggttggatattttttcggttt 150  Q
    ||||||||||||||   |||||||||||||||    
T  11727418 gaaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 48070772 - 48070614
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||| |  ||||| || |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| |    
T  48070772 gatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttg 48070673  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||| ||||||||| || ||||||||| || | |||| | ||||||||||| |||||||    
T  48070672 gtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 3996991 - 3997128
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||    
T  3996991 gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggacttt 3997090  T
Q  168 cggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  3997091 cggtttcattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 46265353 - 46265457
Alignment:
Q  69 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 168  Q
    ||||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||    
T  46265353 aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttc 46265452  T
Q  169 ggttt 173  Q
    |||||    
T  46265453 ggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  33 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 132  Q
    |||||||||||   |||||| |||| |||||||| ||||| || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  133 tggatattttttcggtttggttcggtttggactttcggttt 173  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  114 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 27226938 - 27227089
Alignment:
Q  54 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 153  Q
    |||| ||||| || ||||| |||||||| || ||||||| |||| |||||| | || ||  | || ||||| ||||| | |||||  ||||  ||||| |    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatgggataccttttaagtttgtt 27227037  T
Q  154 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||||| | |||||| |||||| | ||||| ||||| |||||||    
T  27227038 tcggtttggacttttgatttcatcggttttgtccgaacaacttacaccccta 27227089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  141 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  141 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 193  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 46655701 - 46655514
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||||||    
T  46655701 atcattggattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaacc 46655602  T
Q  119 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||  ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655601 gaaccaagtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 44471168 - 44471020
Alignment:
Q  54 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 153  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  |||||||||||||    
T  44471168 aaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggt 44471069  T
Q  154 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 202  Q
    |||||||||| ||||| |||||| |||||| | ||||||||||| ||||    
T  44471068 tcggtttggattttcgatttcatcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  30 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 129  Q
    |||| |||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  130 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 30554574 - 30554726
Alignment:
Q  54 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 153  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| |     
T  30554574 aaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagc 30554673  T
Q  154 tcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    ||| |||||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  30554674 tcgatttggattttcggtttcatcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  108 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 27524154 - 27524053
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||    
T  27524154 gaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggacttt 27524055  T
Q  168 cg 169  Q
    ||    
T  27524054 cg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 779533 - 779629
Alignment:
Q  54 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 150  Q
    |||| ||||| || ||||| ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779533 aaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  109 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 197  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  140 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 203  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 26757751 - 26757593
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||  || ||||| |||||| ||| |||| ||| | || |||||| |  |||| ||||  |||||||||| || | ||| |||||||    
T  26757751 gatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcg 26757652  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
     ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757651 attttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  74 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 160  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  105 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 204  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  205 a 205  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 31111592 - 31111413
Alignment:
Q  26 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 125  Q
    |||||||| ||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||||||||    
T  31111592 gattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaa 31111493  T
Q  126 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111492 acaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 4638340 - 4638207
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||| || | |||| |||||||| | |||||||||    
T  4638340 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaacc 4638241  T
Q  119 gaaccaaacaaggttggatattttttcggtttgg 152  Q
    ||||| |||||||| |||||||||||||||||||    
T  4638240 gaaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 13852276 - 13852453
Alignment:
Q  26 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 125  Q
    |||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||| |||    
T  13852276 gattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaa 13852375  T
Q  126 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 203  Q
    |||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852376 acaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 29109190 - 29109348
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||| |  ||||||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| ||||||     
T  29109190 gatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttca 29109289  T
Q  147 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    ||||||||||||||||| |||| |||||||  ||||| | ||||||||||| |||||||    
T  29109290 gtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 3919857 - 3920029
Alignment:
Q  21 catcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 120  Q
    |||||| | ||||||||||||    ||||||| |||| |||||| | ||||||||||||||||||||||||| | || |||||| | |||||  |||| |    
T  3919857 catcggttcggttcatcggttctttagatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaa 3919956  T
Q  121 accaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 193  Q
    ||||||||| || | ||  |||||||||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919957 accaaacaaagtcgaatgctttttcggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 36009345 - 36009278
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagat 86  Q
    |||||||||||| |||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  36009345 atcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  86 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 185  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  186 tcgaaccacttaaaccccta 205  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  74 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 160  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 38607141 - 38607020
Alignment:
Q  30 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 129  Q
    ||||||||||||| |  |||||| |||| ||||| || ||||| |||||||| || || |||| |||| |||||| | |||||  || |||| |||||||    
T  38607141 ggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcgaa-caaacaa 38607043  T
Q  130 ggttggatattttttcggtttgg 152  Q
    ||| |||||| ||||||||||||    
T  38607042 ggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 5526353 - 5526225
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| |||    
T  5526353 gaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatttt 5526255  T
Q  168 cggtttcattggttttattcgaaccactta 197  Q
    || |||| |||||||| | || ||||||||    
T  5526254 cgatttctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  119 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 206  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 1844 - 1970
Alignment:
Q  19 atcatcggattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 118  Q
    |||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||| |||| |||| |||| ||| | |||||||||    
T  1844 atcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaacc 1943  T
Q  119 gaaccaaacaaggttggatattttttc 145  Q
    |||||||||||||| ||||||||||||    
T  1944 gaaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 7176529 - 7176662
Alignment:
Q  69 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 168  Q
    |||| ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   ||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  169 ggtttcattggttttattcgaaccacttaaaccc 202  Q
    |||||||| |||||| | |||| |||||| ||||    
T  7176629 ggtttcatcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 23301548 - 23301441
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 167  Q
    ||||| |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaatttt 23301449  T
Q  168 cggtttca 175  Q
    ||||||||    
T  23301448 cggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  115 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 23300583 - 23300455
Alignment:
Q  47 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 146  Q
    |||||| |||| ||||| |  ||||| ||| |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||    
T  23300583 gatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcg 23300484  T
Q  147 gtttggttcggtttggactttcggtttca 175  Q
    ||||||||||||||| | |||||||||||    
T  23300483 gtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  48 atctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 147  Q
    |||||||||| |||||||| ||||| | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  148 ttt 150  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  74 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 172  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  173 tcattggttttattcgaaccact 195  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 23585990 - 23585913
Alignment:
Q  68 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 145  Q
    |||||||||||||||| ||||||||   |||||| || | |||||  |||||||| ||||||||| ||||| ||||||    
T  23585990 gaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactttttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  115 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 205  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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