View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8206A_high_8 (Length: 347)
Name: NF8206A_high_8
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 2 - 331
Target Start/End: Original strand, 38604383 - 38604712
Alignment:
| Q |
2 |
cagagcaatgattaacttagaatccttctttctggcttcttccaagatcttttcagcctctttcatcccaaatgaatttgaagaatgaatcctaagaaca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38604383 |
cagagcaatgattaacttagaatccttctttctggcttcttccaagatctttccagcctctttcatcccaaatgaatctgaagaatgaatcctaagaaaa |
38604482 |
T |
|
| Q |
102 |
ttactagtgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38604483 |
ttactagtgtataaacctatactttccaatagcaacaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaa |
38604582 |
T |
|
| Q |
202 |
cagattgtgaaggatatggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaaggcattaacaac |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38604583 |
cagattgtgaaggatatggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaaggcattaacaac |
38604682 |
T |
|
| Q |
302 |
tatattacacatcctgcttttccatccttc |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38604683 |
tatattacacatcctgcttttccatccttc |
38604712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 107 - 292
Target Start/End: Original strand, 40179980 - 40180165
Alignment:
| Q |
107 |
agtgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaacagat |
206 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||| ||| ||||||| | || |||||| | |
|
|
| T |
40179980 |
agtgtgtaagcctatactttccaatagcatcaccatctccaaagcttgtccgatttccctagcatcaacataggtcttaataatcacattgaaaacttct |
40180079 |
T |
|
| Q |
207 |
tgtgaaggatatggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaaggc |
292 |
Q |
| |
|
| ||||||| |||||||||| ||| | ||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
40180080 |
tttgaaggacgctgtagcggaccgtctgcaatcattttaaagatcaactgcttggctgcatcaaaatctttaaactgacacaaggc |
40180165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 40179875 - 40179921
Alignment:
| Q |
5 |
agcaatgattaacttagaatccttctttctggcttcttccaagatct |
51 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
40179875 |
agcaacgattaacttagagtccttctttttggcttcttccaagatct |
40179921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 44460909 - 44460732
Alignment:
| Q |
109 |
tgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaacagattg |
208 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||| ||||||||||| || | || || |
|
|
| T |
44460909 |
tgtaaaaacccatactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatat |
44460810 |
T |
|
| Q |
209 |
tgaaggatatggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaaggc |
292 |
Q |
| |
|
|||||||| ||| ||| ||| | |||||||||| |||||| |||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
44460809 |
tgaaggat---gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaaggc |
44460732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 292
Target Start/End: Complemental strand, 44468442 - 44468265
Alignment:
| Q |
109 |
tgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattatatcgaaaacagattg |
208 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||| ||||||||||| || | || || |
|
|
| T |
44468442 |
tgtaaaaacccatactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattatactgatatcatatat |
44468343 |
T |
|
| Q |
209 |
tgaaggatatggtagcggaccatcttctatcattttaaagatcaattgcttggctgcatcgaaatcttcaaaccgacacaaggc |
292 |
Q |
| |
|
|||||||| ||| ||| ||| | |||||||||| |||||| |||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
44468342 |
tgaaggat---gta---gactgtctgcaatcattttaaggatcaactgcttggctgtttcgaaatctttaaacccacacaaggc |
44468265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 34501775 - 34501860
Alignment:
| Q |
109 |
tgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattata |
194 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
34501775 |
tgtatacaccaatactttccaatagcatcaccatctccaaaacctgtccgatttccccagctttaacataggcagtaataattata |
34501860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 44461010 - 44460966
Alignment:
| Q |
8 |
aatgattaacttagaatccttctttctggcttcttccaagatctt |
52 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| |||||||||||| |
|
|
| T |
44461010 |
aatgattaacttacaatcctgctttttggctttttccaagatctt |
44460966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 44468543 - 44468499
Alignment:
| Q |
8 |
aatgattaacttagaatccttctttctggcttcttccaagatctt |
52 |
Q |
| |
|
||||||||||||| |||||| |||| |||||| |||||||||||| |
|
|
| T |
44468543 |
aatgattaacttacaatcctgctttttggctttttccaagatctt |
44468499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 46359708 - 46359623
Alignment:
| Q |
109 |
tgtataaacctatactttccaatagcatcaccatctccaaagcccgtccggtttccctagctttaacacaggcactaataattata |
194 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| || ||||| ||||| ||| |||||| ||||| ||||||||||| |
|
|
| T |
46359708 |
tgtaaaaacccatactttccaatagcatcaccatctccaaaacctgtccgacttccccagcattaacataggcagtaataattata |
46359623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 46359809 - 46359765
Alignment:
| Q |
8 |
aatgattaacttagaatccttctttctggcttcttccaagatctt |
52 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
46359809 |
aatgattaacttacaatcctgctttttggcttcttccaagatctt |
46359765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University