View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8206A_low_1 (Length: 1011)

Name: NF8206A_low_1
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8206A_low_1
NF8206A_low_1
[»] chr5 (3 HSPs)
chr5 (207-300)||(33811019-33811112)
chr5 (207-300)||(33815937-33816030)
chr5 (855-892)||(19944036-19944073)
[»] chr7 (2 HSPs)
chr7 (210-300)||(4836354-4836444)
chr7 (855-892)||(6692086-6692123)
[»] chr8 (2 HSPs)
chr8 (862-934)||(12933811-12933883)
chr8 (885-922)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (862-934)||(14177081-14177153)
chr4 (862-976)||(28608680-28608794)
chr4 (870-923)||(20706182-20706234)
[»] chr6 (2 HSPs)
chr6 (855-892)||(796698-796735)
chr6 (855-892)||(8273092-8273129)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 33811112 - 33811019
Alignment:
Q  207 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 300  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33811112 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33811019  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 300
Target Start/End: Complemental strand, 33816030 - 33815937
Alignment:
Q  207 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 300  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33816030 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33815937  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 892
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  855 gagcagttggatgtgaaaactgcatttcttcatggaga 892  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 4836354 - 4836444
Alignment:
Q  210 atccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 300  Q
    ||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  4836354 atccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 4836444  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 892
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  855 gagcagttggatgtgaaaactgcatttcttcatggaga 892  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 862 - 934
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  862 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 934  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 885 - 922
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  885 catggagatttggaagaggagatttatatggagcaacc 922  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 862 - 934
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  862 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 934  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 976
Target Start/End: Complemental strand, 28608794 - 28608680
Alignment:
Q  862 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 960  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  961 gcaaattgaataagag 976  Q
    |||||||||| |||||    
T  28608695 gcaaattgaagaagag 28608680  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 870 - 923
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  870 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 923  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 892
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  855 gagcagttggatgtgaaaactgcatttcttcatggaga 892  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 892
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  855 gagcagttggatgtgaaaactgcatttcttcatggaga 892  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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