View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_101 (Length: 261)
Name: NF8206A_low_101
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_101 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 51568755 - 51568501
Alignment:
| Q |
8 |
agaatataaaaagtcatgcaaggtaaccatcaaagcttatttcacacaatctctttcagatagaagatcattaatcagtatgttgaacttctcagaaaga |
107 |
Q |
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| T |
51568755 |
agaatatacaaagtcatgcaagctaaccatcaaagcttatttcacacaatctttttcagatagaagatcattaatcagtatgttgaacttctcagaaaga |
51568656 |
T |
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| Q |
108 |
agacactgataatccatatta-aaaagtttgcatagaagaaaattcaaatgtttcagcnnnnnnntatggaaatgtcatgaaacttactttagcatctac |
206 |
Q |
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| T |
51568655 |
agacgctgataatccatattaaaaaaatttgcatagaagaaaattcaaatgtttcagcaaaaaaatatggaaatgtcatgaaacttactttatcatctac |
51568556 |
T |
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| Q |
207 |
ttctgtgttatgactcaaccaagcataagcctctctaaaatcatcaaaaacatga |
261 |
Q |
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| T |
51568555 |
ttctgtgttatgactcaaccaagcataagcctctctaaaatcatcaaaaacatga |
51568501 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 11451915 - 11452013
Alignment:
| Q |
21 |
tcatgcaaggtaaccatcaaagcttatttcacacaatctctttcagatagaagatcattaatcagtatgttgaacttctcag-aaagaagacactgata |
118 |
Q |
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||||||||| ||||||||| |||||||| |||||| || ||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |
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| T |
11451915 |
tcatgcaagctaaccatcagagcttattatacacaaccttttttagatagaagatcattaatcagtatgttgaacttgtcagaaaaaaagacactgata |
11452013 |
T |
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