View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8206A_low_104 (Length: 257)
Name: NF8206A_low_104
Description: NF8206A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8206A_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43410771 - 43411010
Alignment:
| Q |
1 |
acttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgccgatcttgaagaatgtaaagacttgcacacatcatctcacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410771 |
acttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacac |
43410870 |
T |
|
| Q |
101 |
acgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ctagctagc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43410871 |
acgtaccattagactctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagc |
43410970 |
T |
|
| Q |
197 |
ttacaacttc---tcatctgaatgtgttgtgtctgtctgt |
233 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
43410971 |
ttacaacttctgatcatctgaatgtgttgtgtctgtctgt |
43411010 |
T |
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